Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q6F entry

There are 2 chains in PDB entry 6Q6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 414
B
 MET 1LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6Q6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
79 86Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
186 204Right-handed alpha
Helix 7
AA7
A
218 234Right-handed alpha
Helix 8
AA8
A
235 242Right-handed alpha
Helix 9
AA9
A
251 261Right-handed alpha
Helix 10
AB1
A
312 321Right-handed alpha
Helix 11
AB2
A
329 347Right-handed alpha
Helix 12
AB3
A
349 369Right-handed alpha
Helix 13
AB4
A
373 382Right-handed alpha
Helix 14
AB5
A
383 386Right-handed 310
Helix 15
AB6
A
387 391Right-handed 310
Helix 16
AB7
A
394 412Right-handed alpha
Helix 17
AB8
B
16 30Right-handed alpha
Helix 18
AB9
B
31 35Right-handed 310
Helix 19
AC1
B
45 52Right-handed alpha
Helix 20
AC2
B
54 68Right-handed alpha
Helix 21
AC3
B
81 86Right-handed alpha
Helix 22
AC4
B
94 104Right-handed alpha
Helix 23
AC5
B
185 203Right-handed alpha
Helix 24
AC6
B
216 233Right-handed alpha
Helix 25
AC7
B
235 242Right-handed alpha
Helix 26
AC8
B
250 259Right-handed alpha
Helix 27
AC9
B
287 291Right-handed 310
Helix 28
AD1
B
312 321Right-handed alpha
Helix 29
AD2
B
329 348Right-handed alpha
Helix 30
AD3
B
349 369Right-handed alpha
Helix 31
AD4
B
373 382Right-handed alpha
Helix 32
AD5
B
387 391Right-handed 310
Helix 33
AD6
B
393 414Right-handed alpha
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There are 6 sheets in PDB entry 6Q6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
5 14parallel
Strand 3
A
69 72parallel
Strand 4
A
303 307parallel
Strand 5
A
291 296anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
129 130anti-parallel
Strand 8
A
266 269parallel
Strand 9
A
207 211parallel
Strand 10
A
246 250parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
150 158anti-parallel
Strand 3
A
170 172anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
B
183 184anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
B
177 181anti-parallel
Strand 3
B
142 146anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 43first strand
Strand 2
B
9 14parallel
Strand 3
B
69 72parallel
Strand 4
B
303 306parallel
Strand 5
B
294 296anti-parallel
Strand 6
B
106 110anti-parallel
Strand 7
B
129 131anti-parallel
Strand 8
B
266 269parallel
Strand 9
B
207 210parallel
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