Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q6Q entry

There is 1 chain in PDB entry 6Q6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 4VAL 1336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6Q6Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
74 76Right-handed 310
Helix 3
AA3
A
77 82Right-handed 310
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
117 132Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
154 163Right-handed alpha
Helix 10
AB1
A
203 207Right-handed 310
Helix 11
AB2
A
219 228Right-handed alpha
Helix 12
AB3
A
248 259Right-handed alpha
Helix 13
AB4
A
270 278Right-handed alpha
Helix 14
AB5
A
291 295Right-handed 310
Helix 15
AB6
A
311 323Right-handed alpha
Helix 16
AB7
A
331 343Right-handed alpha
Helix 17
AB8
A
346 353Right-handed alpha
Helix 18
AB9
A
354 362Right-handed alpha
Helix 19
AC1
A
368 374Right-handed alpha
Helix 20
AC2
A
393 398Right-handed alpha
Helix 21
AC3
A
473 479Right-handed alpha
Helix 22
AC4
A
486 501Right-handed alpha
Helix 23
AC5
A
511 538Right-handed alpha
Helix 24
AC6
A
546 554Right-handed 310
Helix 25
AC7
A
588 595Right-handed alpha
Helix 26
AC8
A
629 634Right-handed alpha
Helix 27
AC9
A
643 650Right-handed 310
Helix 28
AD1
A
682 691Right-handed alpha
Helix 29
AD2
A
706 712Right-handed alpha
Helix 30
AD3
A
730 734Right-handed 310
Helix 31
AD4
A
777 789Right-handed alpha
Helix 32
AD5
A
792 794Right-handed 310
Helix 33
AD6
A
811 829Right-handed alpha
Helix 34
AD7
A
837 845Right-handed alpha
Helix 35
AD8
A
884 894Right-handed alpha
Helix 36
AD9
A
924 944Right-handed alpha
Helix 37
AE1
A
946 954Right-handed alpha
Helix 38
AE2
A
970 985Right-handed alpha
Helix 39
AE3
A
985 1000Right-handed alpha
Helix 40
AE4
A
1021 1025Right-handed 310
Helix 41
AE5
A
1050 1064Right-handed alpha
Helix 42
AE6
A
1066 1068Right-handed 310
Helix 43
AE7
A
1090 1110Right-handed alpha
Helix 44
AE8
A
1110 1117Right-handed alpha
Helix 45
AE9
A
1121 1132Right-handed alpha
Helix 46
AF1
A
1196 1216Right-handed alpha
Helix 47
AF2
A
1231 1235Right-handed 310
Helix 48
AF3
A
1261 1265Right-handed 310
Helix 49
AF4
A
1271 1276Right-handed alpha
Helix 50
AF5
A
1277 1294Right-handed alpha
Helix 51
AF6
A
1307 1315Right-handed alpha
Helix 52
AF7
A
1317 1323Right-handed alpha
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There are 12 sheets in PDB entry 6Q6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 19first strand
Strand 2
A
6 11anti-parallel
Strand 3
A
85 87parallel
Strand 4
A
53 60anti-parallel
Strand 5
A
65 72anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
234 237first strand
Strand 2
A
242 245anti-parallel
Strand 3
A
284 286parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
297 299first strand
Strand 2
A
303 307anti-parallel
Strand 3
A
410 417anti-parallel
Strand 4
A
377 382anti-parallel
Strand 5
A
387 392anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
423 428first strand
Strand 2
A
442 448anti-parallel
Strand 3
A
458 464anti-parallel
Strand 4
A
471 472anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
562 566first strand
Strand 2
A
1247 1252parallel
Strand 3
A
1180 1190parallel
Strand 4
A
1161 1174anti-parallel
Strand 5
A
1003 1016anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
638 642first strand
Strand 2
A
674 680anti-parallel
Strand 3
A
610 616anti-parallel
Strand 4
A
832 835parallel
Strand 5
A
757 762anti-parallel
Strand 6
A
769 773anti-parallel
Strand 7
A
796 800parallel
Strand 8
A
1075 1076anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
667 668first strand
Strand 2
A
622 628anti-parallel
Strand 3
A
694 699anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
652 654first strand
Strand 2
A
659 661anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
721 725first strand
Strand 2
A
902 911anti-parallel
Strand 3
A
865 877parallel
Strand 4
A
851 859anti-parallel
Strand 5
A
737 745anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
959 961first strand
Strand 2
A
967 969anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1070 1071first strand
Strand 2
A
1038 1042parallel
Strand 3
A
1026 1032anti-parallel
Strand 4
A
1137 1142anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1148 1150first strand
Strand 2
A
1155 1157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il