Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q78 entry

There are 2 chains in PDB entry 6Q78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 47ASN 420
B
 GLY 47ASN 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6Q78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 60Right-handed 310
Helix 2
AA2
A
66 80Right-handed alpha
Helix 3
AA3
A
95 99Right-handed 310
Helix 4
AA4
A
103 110Right-handed alpha
Helix 5
AA5
A
134 154Right-handed alpha
Helix 6
AA6
A
173 177Right-handed 310
Helix 7
AA7
A
178 190Right-handed alpha
Helix 8
AA8
A
195 212Right-handed alpha
Helix 9
AA9
A
244 261Right-handed alpha
Helix 10
AB1
A
280 285Right-handed alpha
Helix 11
AB2
A
302 306Right-handed 310
Helix 12
AB3
A
308 331Right-handed alpha
Helix 13
AB4
A
353 358Right-handed alpha
Helix 14
AB5
A
358 365Right-handed alpha
Helix 15
AB6
A
366 368Right-handed 310
Helix 16
AB7
A
392 401Right-handed alpha
Helix 17
AB8
A
407 411Right-handed 310
Helix 18
AB9
B
52 60Right-handed 310
Helix 19
AC1
B
66 80Right-handed alpha
Helix 20
AC2
B
95 99Right-handed 310
Helix 21
AC3
B
103 110Right-handed alpha
Helix 22
AC4
B
134 153Right-handed alpha
Helix 23
AC5
B
173 177Right-handed 310
Helix 24
AC6
B
178 190Right-handed alpha
Helix 25
AC7
B
195 212Right-handed alpha
Helix 26
AC8
B
244 261Right-handed alpha
Helix 27
AC9
B
280 285Right-handed alpha
Helix 28
AD1
B
302 306Right-handed 310
Helix 29
AD2
B
308 331Right-handed alpha
Helix 30
AD3
B
353 358Right-handed alpha
Helix 31
AD4
B
358 365Right-handed alpha
Helix 32
AD5
B
366 368Right-handed 310
Helix 33
AD6
B
392 401Right-handed alpha
Helix 34
AD7
B
407 411Right-handed 310
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There are 4 sheets in PDB entry 6Q78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
84 89parallel
Strand 3
A
372 375parallel
Strand 4
A
333 339parallel
Strand 5
A
296 301parallel
Strand 6
A
268 272parallel
Strand 7
A
223 226parallel
Strand 8
A
156 160parallel
Strand 9
A
115 119parallel
Strand 10
A
84 89parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
382 383anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 406first strand
Strand 2
B
84 89parallel
Strand 3
B
372 375parallel
Strand 4
B
333 339parallel
Strand 5
B
296 301parallel
Strand 6
B
268 272parallel
Strand 7
B
223 226parallel
Strand 8
B
156 160parallel
Strand 9
B
115 119parallel
Strand 10
B
84 89parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
382 383anti-parallel
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