Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q82 entry

There are 2 chains in PDB entry 6Q82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 1076
B
 GLN 8ALA 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 6Q82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
22 34Right-handed alpha
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
53 64Right-handed alpha
Helix 5
AA5
A
80 99Right-handed alpha
Helix 6
AA6
A
108 126Right-handed alpha
Helix 7
AA7
A
144 151Right-handed alpha
Helix 8
AA8
A
163 171Right-handed alpha
Helix 9
AA9
A
176 184Right-handed alpha
Helix 10
AB1
A
186 211Right-handed alpha
Helix 11
AB2
A
216 224Right-handed alpha
Helix 12
AB3
A
224 239Right-handed alpha
Helix 13
AB4
A
245 262Right-handed alpha
Helix 14
AB5
A
272 285Right-handed alpha
Helix 15
AB6
A
293 310Right-handed alpha
Helix 16
AB7
A
311 314Right-handed 310
Helix 17
AB8
A
315 328Right-handed alpha
Helix 18
AB9
A
344 356Right-handed alpha
Helix 19
AC1
A
358 374Right-handed alpha
Helix 20
AC2
A
376 386Right-handed alpha
Helix 21
AC3
A
397 413Right-handed alpha
Helix 22
AC4
A
423 428Right-handed alpha
Helix 23
AC5
A
428 441Right-handed alpha
Helix 24
AC6
A
450 470Right-handed alpha
Helix 25
AC7
A
471 483Right-handed alpha
Helix 26
AC8
A
485 510Right-handed alpha
Helix 27
AC9
A
514 524Right-handed alpha
Helix 28
AD1
A
537 557Right-handed alpha
Helix 29
AD2
A
564 572Right-handed alpha
Helix 30
AD3
A
575 589Right-handed alpha
Helix 31
AD4
A
594 622Right-handed alpha
Helix 32
AD5
A
625 643Right-handed alpha
Helix 33
AD6
A
650 672Right-handed alpha
Helix 34
AD7
A
676 678Right-handed 310
Helix 35
AD8
A
679 691Right-handed alpha
Helix 36
AD9
A
698 715Right-handed alpha
Helix 37
AE1
A
720 746Right-handed alpha
Helix 38
AE2
A
749 770Right-handed alpha
Helix 39
AE3
A
781 796Right-handed alpha
Helix 40
AE4
A
799 813Right-handed alpha
Helix 41
AE5
A
814 819Right-handed alpha
Helix 42
AE6
A
820 833Right-handed alpha
Helix 43
AE7
A
848 860Right-handed alpha
Helix 44
AE8
A
864 883Right-handed alpha
Helix 45
AE9
A
888 900Right-handed alpha
Helix 46
AF1
A
903 908Right-handed alpha
Helix 47
AF2
A
911 929Right-handed alpha
Helix 48
AF3
A
929 935Right-handed alpha
Helix 49
AF4
A
942 950Right-handed alpha
Helix 50
AF5
A
955 972Right-handed alpha
Helix 51
AF6
A
976 990Right-handed alpha
Helix 52
AF7
A
990 1005Right-handed alpha
Helix 53
AF8
A
1010 1024Right-handed alpha
Helix 54
AF9
A
1024 1036Right-handed alpha
Helix 55
AG1
A
1045 1058Right-handed alpha
Helix 56
AG2
A
1063 1071Right-handed alpha
Helix 57
AG3
A
1071 1076Right-handed alpha
Helix 58
AG4
B
22 33Right-handed alpha
Helix 59
AG5
B
69 73Right-handed 310
Helix 60
AG6
B
75 81Right-handed 310
Helix 61
AG7
B
94 100Right-handed alpha
Helix 62
AG8
B
100 110Right-handed alpha
Helix 63
AG9
B
158 170Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6Q82.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
9 17parallel
Strand 4
B
85 91parallel
Strand 5
B
117 122parallel
Strand 6
B
144 148parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il