Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q84 entry

There are 6 chains in PDB entry 6Q84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LEU 1076
B	GLN 8	ALA 178
C	ALA 17	ALA 153
D	SER 3	LEU 1076
E	GLN 8	ALA 178
F	THR 18	ALA 153

There are131 helices in PDB entry 6Q84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	22	34	Right-handed alpha
Helix 3	AA3	A	38	49	Right-handed alpha
Helix 4	AA4	A	53	66	Right-handed alpha
Helix 5	AA5	A	79	104	Right-handed alpha
Helix 6	AA6	A	107	126	Right-handed alpha
Helix 7	AA7	A	144	152	Right-handed alpha
Helix 8	AA8	A	165	173	Right-handed alpha
Helix 9	AA9	A	176	184	Right-handed alpha
Helix 10	AB1	A	186	211	Right-handed alpha
Helix 11	AB2	A	216	224	Right-handed alpha
Helix 12	AB3	A	224	239	Right-handed alpha
Helix 13	AB4	A	245	262	Right-handed alpha
Helix 14	AB5	A	272	286	Right-handed alpha
Helix 15	AB6	A	293	310	Right-handed alpha
Helix 16	AB7	A	311	314	Right-handed 310
Helix 17	AB8	A	315	327	Right-handed alpha
Helix 18	AB9	A	344	356	Right-handed alpha
Helix 19	AC1	A	358	374	Right-handed alpha
Helix 20	AC2	A	376	386	Right-handed alpha
Helix 21	AC3	A	395	414	Right-handed alpha
Helix 22	AC4	A	423	441	Right-handed alpha
Helix 23	AC5	A	450	470	Right-handed alpha
Helix 24	AC6	A	471	482	Right-handed alpha
Helix 25	AC7	A	485	514	Right-handed alpha
Helix 26	AC8	A	514	524	Right-handed alpha
Helix 27	AC9	A	537	557	Right-handed alpha
Helix 28	AD1	A	564	572	Right-handed alpha
Helix 29	AD2	A	575	589	Right-handed alpha
Helix 30	AD3	A	594	615	Right-handed alpha
Helix 31	AD4	A	615	622	Right-handed alpha
Helix 32	AD5	A	623	625	Right-handed 310
Helix 33	AD6	A	626	640	Right-handed alpha
Helix 34	AD7	A	649	672	Right-handed alpha
Helix 35	AD8	A	679	691	Right-handed alpha
Helix 36	AD9	A	698	715	Right-handed alpha
Helix 37	AE1	A	720	744	Right-handed alpha
Helix 38	AE2	A	749	770	Right-handed alpha
Helix 39	AE3	A	787	796	Right-handed alpha
Helix 40	AE4	A	799	813	Right-handed alpha
Helix 41	AE5	A	814	819	Right-handed alpha
Helix 42	AE6	A	820	832	Right-handed alpha
Helix 43	AE7	A	848	860	Right-handed alpha
Helix 44	AE8	A	864	883	Right-handed alpha
Helix 45	AE9	A	888	900	Right-handed alpha
Helix 46	AF1	A	903	908	Right-handed alpha
Helix 47	AF2	A	911	929	Right-handed alpha
Helix 48	AF3	A	929	935	Right-handed alpha
Helix 49	AF4	A	942	950	Right-handed alpha
Helix 50	AF5	A	955	972	Right-handed alpha
Helix 51	AF6	A	976	990	Right-handed alpha
Helix 52	AF7	A	990	1005	Right-handed alpha
Helix 53	AF8	A	1009	1024	Right-handed alpha
Helix 54	AF9	A	1024	1039	Right-handed alpha
Helix 55	AG1	A	1044	1046	Right-handed 310
Helix 56	AG2	A	1047	1056	Right-handed alpha
Helix 57	AG3	A	1063	1076	Right-handed alpha
Helix 58	AG4	B	22	32	Right-handed alpha
Helix 59	AG5	B	77	81	Right-handed 310
Helix 60	AG6	B	94	100	Right-handed alpha
Helix 61	AG7	B	100	112	Right-handed alpha
Helix 62	AG8	B	132	136	Right-handed 310
Helix 63	AG9	B	137	141	Right-handed 310
Helix 64	AH1	B	158	170	Right-handed alpha
Helix 65	AH2	C	24	26	Right-handed 310
Helix 66	AH3	C	117	131	Right-handed alpha
Helix 67	AH4	D	4	15	Right-handed alpha
Helix 68	AH5	D	22	34	Right-handed alpha
Helix 69	AH6	D	38	49	Right-handed alpha
Helix 70	AH7	D	53	66	Right-handed alpha
Helix 71	AH8	D	79	100	Right-handed alpha
Helix 72	AH9	D	107	126	Right-handed alpha
Helix 73	AI1	D	144	152	Right-handed alpha
Helix 74	AI2	D	165	171	Right-handed alpha
Helix 75	AI3	D	176	184	Right-handed alpha
Helix 76	AI4	D	186	211	Right-handed alpha
Helix 77	AI5	D	216	224	Right-handed alpha
Helix 78	AI6	D	224	239	Right-handed alpha
Helix 79	AI7	D	245	259	Right-handed alpha
Helix 80	AI8	D	272	286	Right-handed alpha
Helix 81	AI9	D	293	310	Right-handed alpha
Helix 82	AJ1	D	311	314	Right-handed 310
Helix 83	AJ2	D	315	327	Right-handed alpha
Helix 84	AJ3	D	344	356	Right-handed alpha
Helix 85	AJ4	D	358	374	Right-handed alpha
Helix 86	AJ5	D	376	386	Right-handed alpha
Helix 87	AJ6	D	396	414	Right-handed alpha
Helix 88	AJ7	D	423	441	Right-handed alpha
Helix 89	AJ8	D	450	470	Right-handed alpha
Helix 90	AJ9	D	471	482	Right-handed alpha
Helix 91	AK1	D	485	514	Right-handed alpha
Helix 92	AK2	D	514	524	Right-handed alpha
Helix 93	AK3	D	537	557	Right-handed alpha
Helix 94	AK4	D	564	572	Right-handed alpha
Helix 95	AK5	D	575	589	Right-handed alpha
Helix 96	AK6	D	594	615	Right-handed alpha
Helix 97	AK7	D	615	622	Right-handed alpha
Helix 98	AK8	D	623	625	Right-handed 310
Helix 99	AK9	D	626	640	Right-handed alpha
Helix 100	AL1	D	650	672	Right-handed alpha
Helix 101	AL2	D	679	691	Right-handed alpha
Helix 102	AL3	D	698	715	Right-handed alpha
Helix 103	AL4	D	720	744	Right-handed alpha
Helix 104	AL5	D	749	770	Right-handed alpha
Helix 105	AL6	D	785	796	Right-handed alpha
Helix 106	AL7	D	799	813	Right-handed alpha
Helix 107	AL8	D	814	819	Right-handed alpha
Helix 108	AL9	D	820	832	Right-handed alpha
Helix 109	AM1	D	848	860	Right-handed alpha
Helix 110	AM2	D	864	883	Right-handed alpha
Helix 111	AM3	D	888	900	Right-handed alpha
Helix 112	AM4	D	903	908	Right-handed alpha
Helix 113	AM5	D	911	929	Right-handed alpha
Helix 114	AM6	D	929	935	Right-handed alpha
Helix 115	AM7	D	942	950	Right-handed alpha
Helix 116	AM8	D	955	972	Right-handed alpha
Helix 117	AM9	D	976	990	Right-handed alpha
Helix 118	AN1	D	990	1005	Right-handed alpha
Helix 119	AN2	D	1009	1024	Right-handed alpha
Helix 120	AN3	D	1024	1039	Right-handed alpha
Helix 121	AN4	D	1047	1056	Right-handed alpha
Helix 122	AN5	D	1063	1076	Right-handed alpha
Helix 123	AN6	E	22	32	Right-handed alpha
Helix 124	AN7	E	77	81	Right-handed 310
Helix 125	AN8	E	94	100	Right-handed alpha
Helix 126	AN9	E	100	112	Right-handed alpha
Helix 127	AO1	E	132	136	Right-handed 310
Helix 128	AO2	E	137	141	Right-handed 310
Helix 129	AO3	E	158	170	Right-handed alpha
Helix 130	AO4	F	24	26	Right-handed 310
Helix 131	AO5	F	117	131	Right-handed alpha

There are 8 sheets in PDB entry 6Q84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	54	first strand
Strand 2	B	57	65	anti-parallel
Strand 3	B	9	17	parallel
Strand 4	B	85	91	parallel
Strand 5	B	117	122	parallel
Strand 6	B	144	148	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	22	first strand
Strand 2	C	79	83	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	37	48	anti-parallel
Strand 3	C	55	63	anti-parallel
Strand 4	C	69	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	114	first strand
Strand 2	C	99	103	anti-parallel
Strand 3	C	86	96	anti-parallel
Strand 4	C	135	140	anti-parallel
Strand 5	C	145	151	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	54	first strand
Strand 2	E	57	65	anti-parallel
Strand 3	E	9	17	parallel
Strand 4	E	85	91	parallel
Strand 5	E	117	122	parallel
Strand 6	E	144	148	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	22	first strand
Strand 2	F	79	82	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	37	45	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	69	73	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	114	first strand
Strand 2	F	99	103	anti-parallel
Strand 3	F	86	96	anti-parallel
Strand 4	F	134	140	anti-parallel
Strand 5	F	145	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q84

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q84