Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q8M entry

There are 2 chains in PDB entry 6Q8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 23VAL 343
B
 VAL 23VAL 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6Q8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 32Right-handed alpha
Helix 2
AA2
A
42 47Right-handed 310
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
113 118Right-handed alpha
Helix 7
AA7
A
122 141Right-handed alpha
Helix 8
AA8
A
164 171Right-handed alpha
Helix 9
AA9
A
173 186Right-handed alpha
Helix 10
AB1
A
197 200Right-handed 310
Helix 11
AB2
A
201 218Right-handed alpha
Helix 12
AB3
A
238 251Right-handed alpha
Helix 13
AB4
A
270 291Right-handed alpha
Helix 14
AB5
A
303 307Right-handed 310
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
A
329 339Right-handed alpha
Helix 17
AB8
B
24 32Right-handed alpha
Helix 18
AB9
B
42 47Right-handed 310
Helix 19
AC1
B
48 56Right-handed alpha
Helix 20
AC2
B
71 76Right-handed alpha
Helix 21
AC3
B
84 98Right-handed alpha
Helix 22
AC4
B
113 118Right-handed alpha
Helix 23
AC5
B
122 141Right-handed alpha
Helix 24
AC6
B
164 171Right-handed alpha
Helix 25
AC7
B
173 186Right-handed alpha
Helix 26
AC8
B
197 200Right-handed 310
Helix 27
AC9
B
201 218Right-handed alpha
Helix 28
AD1
B
238 251Right-handed alpha
Helix 29
AD2
B
270 291Right-handed alpha
Helix 30
AD3
B
303 307Right-handed 310
Helix 31
AD4
B
308 313Right-handed alpha
Helix 32
AD5
B
329 339Right-handed alpha
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There are 2 sheets in PDB entry 6Q8M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
316 317first strand
Strand 3
A
224 227first strand
Strand 4
A
190 195parallel
Strand 5
A
147 152parallel
Strand 6
A
100 107parallel
Strand 7
A
63 66parallel
Strand 8
A
36 41parallel
Strand 9
A
294 299parallel
Strand 10
A
255 266parallel
Strand 11
A
316 317anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
316 317first strand
Strand 3
B
224 227first strand
Strand 4
B
190 195parallel
Strand 5
B
147 152parallel
Strand 6
B
100 107parallel
Strand 7
B
63 66parallel
Strand 8
B
36 41parallel
Strand 9
B
294 299parallel
Strand 10
B
255 266parallel
Strand 11
B
316 317anti-parallel
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