Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q93 entry

There are 5 chains in PDB entry 6Q93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 277
B	ALA 2	GLU 276
C	ALA 2	LYS 285
D	ALA 2	GLY 273
E	ALA 2	ALA 235

There are103 helices in PDB entry 6Q93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	30	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	57	66	Right-handed alpha
Helix 4	AA4	A	72	76	Right-handed 310
Helix 5	AA5	A	81	83	Right-handed 310
Helix 6	AA6	A	100	113	Right-handed alpha
Helix 7	AA7	A	133	142	Right-handed alpha
Helix 8	AA8	A	155	173	Right-handed alpha
Helix 9	AA9	A	192	204	Right-handed alpha
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	227	232	Right-handed alpha
Helix 12	AB3	A	235	251	Right-handed alpha
Helix 13	AB4	A	261	272	Right-handed alpha
Helix 14	AB5	B	15	30	Right-handed alpha
Helix 15	AB6	B	57	66	Right-handed alpha
Helix 16	AB7	B	72	76	Right-handed 310
Helix 17	AB8	B	81	83	Right-handed 310
Helix 18	AB9	B	100	113	Right-handed alpha
Helix 19	AC1	B	133	142	Right-handed alpha
Helix 20	AC2	B	155	173	Right-handed alpha
Helix 21	AC3	B	192	204	Right-handed alpha
Helix 22	AC4	B	215	223	Right-handed alpha
Helix 23	AC5	B	227	232	Right-handed alpha
Helix 24	AC6	B	235	250	Right-handed alpha
Helix 25	AC7	B	261	273	Right-handed alpha
Helix 26	AC8	C	15	30	Right-handed alpha
Helix 27	AC9	C	46	51	Right-handed alpha
Helix 28	AD1	C	57	66	Right-handed alpha
Helix 29	AD2	C	72	76	Right-handed 310
Helix 30	AD3	C	81	83	Right-handed 310
Helix 31	AD4	C	100	113	Right-handed alpha
Helix 32	AD5	C	133	142	Right-handed alpha
Helix 33	AD6	C	155	173	Right-handed alpha
Helix 34	AD7	C	192	204	Right-handed alpha
Helix 35	AD8	C	216	223	Right-handed alpha
Helix 36	AD9	C	227	232	Right-handed alpha
Helix 37	AE1	C	235	251	Right-handed alpha
Helix 38	AE2	C	261	272	Right-handed alpha
Helix 39	AE3	D	15	30	Right-handed alpha
Helix 40	AE4	D	46	51	Right-handed alpha
Helix 41	AE5	D	57	66	Right-handed alpha
Helix 42	AE6	D	72	76	Right-handed 310
Helix 43	AE7	D	81	83	Right-handed 310
Helix 44	AE8	D	100	113	Right-handed alpha
Helix 45	AE9	D	133	142	Right-handed alpha
Helix 46	AF1	D	155	173	Right-handed alpha
Helix 47	AF2	D	192	204	Right-handed alpha
Helix 48	AF3	D	216	224	Right-handed alpha
Helix 49	AF4	D	227	232	Right-handed alpha
Helix 50	AF5	D	235	251	Right-handed alpha
Helix 51	AF6	D	261	273	Right-handed alpha
Helix 52	AF7	E	15	30	Right-handed alpha
Helix 53	AF8	E	46	51	Right-handed alpha
Helix 54	AF9	E	57	66	Right-handed alpha
Helix 55	AG1	E	72	76	Right-handed 310
Helix 56	AG2	E	81	83	Right-handed 310
Helix 57	AG3	E	100	113	Right-handed alpha
Helix 58	AG4	E	133	142	Right-handed alpha
Helix 59	AG5	E	155	173	Right-handed alpha
Helix 60	AG6	E	192	204	Right-handed alpha
Helix 61	AG7	E	216	224	Right-handed alpha
Helix 62	AG8	E	227	232	Right-handed alpha
Helix 63	AG9	E	235	251	Right-handed alpha
Helix 64	AH1	E	261	273	Right-handed alpha
Helix 65	AH2	F	15	30	Right-handed alpha
Helix 66	AH3	F	46	51	Right-handed alpha
Helix 67	AH4	F	57	66	Right-handed alpha
Helix 68	AH5	F	72	76	Right-handed 310
Helix 69	AH6	F	81	83	Right-handed 310
Helix 70	AH7	F	100	113	Right-handed alpha
Helix 71	AH8	F	133	142	Right-handed alpha
Helix 72	AH9	F	155	173	Right-handed alpha
Helix 73	AI1	F	192	204	Right-handed alpha
Helix 74	AI2	F	216	224	Right-handed alpha
Helix 75	AI3	F	227	232	Right-handed alpha
Helix 76	AI4	F	235	251	Right-handed alpha
Helix 77	AI5	F	261	272	Right-handed alpha
Helix 78	AI6	G	15	30	Right-handed alpha
Helix 79	AI7	G	46	51	Right-handed alpha
Helix 80	AI8	G	57	66	Right-handed alpha
Helix 81	AI9	G	72	76	Right-handed 310
Helix 82	AJ1	G	81	83	Right-handed 310
Helix 83	AJ2	G	100	113	Right-handed alpha
Helix 84	AJ3	G	133	142	Right-handed alpha
Helix 85	AJ4	G	155	173	Right-handed alpha
Helix 86	AJ5	G	192	204	Right-handed alpha
Helix 87	AJ6	G	216	224	Right-handed alpha
Helix 88	AJ7	G	227	232	Right-handed alpha
Helix 89	AJ8	G	235	251	Right-handed alpha
Helix 90	AJ9	G	261	273	Right-handed alpha
Helix 91	AK1	H	15	30	Right-handed alpha
Helix 92	AK2	H	46	51	Right-handed alpha
Helix 93	AK3	H	57	66	Right-handed alpha
Helix 94	AK4	H	72	77	Right-handed alpha
Helix 95	AK5	H	81	83	Right-handed 310
Helix 96	AK6	H	100	113	Right-handed alpha
Helix 97	AK7	H	133	142	Right-handed alpha
Helix 98	AK8	H	155	173	Right-handed alpha
Helix 99	AK9	H	192	204	Right-handed alpha
Helix 100	AL1	H	216	224	Right-handed alpha
Helix 101	AL2	H	227	232	Right-handed alpha
Helix 102	AL3	H	235	251	Right-handed alpha
Helix 103	AL4	H	261	272	Right-handed alpha

There are 8 sheets in PDB entry 6Q93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	85	88	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	122	127	parallel
Strand 5	A	4	9	parallel
Strand 6	A	147	152	parallel
Strand 7	A	179	186	parallel
Strand 8	A	208	212	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	85	88	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	122	127	parallel
Strand 5	B	4	9	parallel
Strand 6	B	147	152	parallel
Strand 7	B	179	186	parallel
Strand 8	B	208	212	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	85	88	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	122	127	parallel
Strand 5	C	4	9	parallel
Strand 6	C	147	152	parallel
Strand 7	C	179	186	parallel
Strand 8	C	208	212	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	85	88	anti-parallel
Strand 3	D	34	39	parallel
Strand 4	D	122	127	parallel
Strand 5	D	4	9	parallel
Strand 6	D	147	152	parallel
Strand 7	D	179	186	parallel
Strand 8	D	208	212	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	85	88	anti-parallel
Strand 3	E	34	39	parallel
Strand 4	E	122	127	parallel
Strand 5	E	4	9	parallel
Strand 6	E	147	152	parallel
Strand 7	E	179	186	parallel
Strand 8	E	208	212	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	79	first strand
Strand 2	F	85	88	anti-parallel
Strand 3	F	34	39	parallel
Strand 4	F	122	127	parallel
Strand 5	F	4	9	parallel
Strand 6	F	147	152	parallel
Strand 7	F	179	186	parallel
Strand 8	F	208	212	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	G	85	88	anti-parallel
Strand 3	G	34	39	parallel
Strand 4	G	122	127	parallel
Strand 5	G	4	9	parallel
Strand 6	G	147	152	parallel
Strand 7	G	179	186	parallel
Strand 8	G	208	212	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	79	first strand
Strand 2	H	85	88	anti-parallel
Strand 3	H	34	39	parallel
Strand 4	H	122	127	parallel
Strand 5	H	4	9	parallel
Strand 6	H	147	152	parallel
Strand 7	H	179	186	parallel
Strand 8	H	208	212	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q93

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q93