Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q9C entry

There are 4 chains in PDB entry 6Q9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	THR 160
B	ARG 2	LYS 419
C	PHE 6	THR 160
D	ARG 2	LYS 419

There are 65 helices in PDB entry 6Q9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	25	28	Right-handed 310
Helix 3	AA3	A	29	42	Right-handed alpha
Helix 4	AA4	A	45	47	Right-handed 310
Helix 5	AA5	A	48	57	Right-handed alpha
Helix 6	AA6	A	59	70	Right-handed alpha
Helix 7	AA7	A	88	95	Right-handed alpha
Helix 8	AA8	A	95	108	Right-handed alpha
Helix 9	AA9	A	130	134	Right-handed 310
Helix 10	AB1	A	148	158	Right-handed alpha
Helix 11	AB2	B	30	37	Right-handed alpha
Helix 12	AB3	B	40	47	Right-handed alpha
Helix 13	AB4	B	50	61	Right-handed alpha
Helix 14	AB5	B	72	82	Right-handed alpha
Helix 15	AB6	B	101	110	Right-handed alpha
Helix 16	AB7	B	110	126	Right-handed alpha
Helix 17	AB8	B	138	155	Right-handed alpha
Helix 18	AB9	B	161	165	Right-handed 310
Helix 19	AC1	B	179	183	Right-handed 310
Helix 20	AC2	B	184	193	Right-handed alpha
Helix 21	AC3	B	210	214	Right-handed 310
Helix 22	AC4	B	221	226	Right-handed alpha
Helix 23	AC5	B	226	234	Right-handed alpha
Helix 24	AC6	B	234	239	Right-handed alpha
Helix 25	AC7	B	271	278	Right-handed alpha
Helix 26	AC8	B	283	287	Right-handed 310
Helix 27	AC9	B	303	305	Right-handed 310
Helix 28	AD1	B	330	346	Right-handed alpha
Helix 29	AD2	B	350	369	Right-handed alpha
Helix 30	AD3	B	373	385	Right-handed alpha
Helix 31	AD4	B	393	399	Right-handed alpha
Helix 32	AD5	B	400	410	Right-handed alpha
Helix 33	AD6	B	410	419	Right-handed alpha
Helix 34	AD7	C	9	23	Right-handed alpha
Helix 35	AD8	C	25	28	Right-handed 310
Helix 36	AD9	C	29	42	Right-handed alpha
Helix 37	AE1	C	45	47	Right-handed 310
Helix 38	AE2	C	48	57	Right-handed alpha
Helix 39	AE3	C	59	70	Right-handed alpha
Helix 40	AE4	C	88	95	Right-handed alpha
Helix 41	AE5	C	95	108	Right-handed alpha
Helix 42	AE6	C	130	134	Right-handed 310
Helix 43	AE7	C	148	157	Right-handed alpha
Helix 44	AE8	D	30	37	Right-handed alpha
Helix 45	AE9	D	40	48	Right-handed alpha
Helix 46	AF1	D	50	61	Right-handed alpha
Helix 47	AF2	D	72	82	Right-handed alpha
Helix 48	AF3	D	101	110	Right-handed alpha
Helix 49	AF4	D	110	126	Right-handed alpha
Helix 50	AF5	D	138	155	Right-handed alpha
Helix 51	AF6	D	161	165	Right-handed 310
Helix 52	AF7	D	179	183	Right-handed 310
Helix 53	AF8	D	184	193	Right-handed alpha
Helix 54	AF9	D	210	214	Right-handed 310
Helix 55	AG1	D	221	226	Right-handed alpha
Helix 56	AG2	D	226	240	Right-handed alpha
Helix 57	AG3	D	271	278	Right-handed alpha
Helix 58	AG4	D	283	287	Right-handed 310
Helix 59	AG5	D	303	305	Right-handed 310
Helix 60	AG6	D	330	346	Right-handed alpha
Helix 61	AG7	D	350	369	Right-handed alpha
Helix 62	AG8	D	373	386	Right-handed alpha
Helix 63	AG9	D	393	399	Right-handed alpha
Helix 64	AH1	D	400	410	Right-handed alpha
Helix 65	AH2	D	410	419	Right-handed alpha

There are 6 sheets in PDB entry 6Q9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	125	first strand
Strand 2	A	81	86	parallel
Strand 3	A	136	139	anti-parallel
Strand 4	A	142	145	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	262	266	parallel
Strand 3	B	250	256	anti-parallel
Strand 4	B	322	326	parallel
Strand 5	B	289	294	anti-parallel
Strand 6	B	298	301	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	127	134	parallel
Strand 3	B	87	93	parallel
Strand 4	B	216	220	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	125	first strand
Strand 2	C	81	86	parallel
Strand 3	C	136	139	anti-parallel
Strand 4	C	142	145	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	262	266	parallel
Strand 3	D	250	256	anti-parallel
Strand 4	D	322	326	parallel
Strand 5	D	289	294	anti-parallel
Strand 6	D	298	301	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	127	134	parallel
Strand 3	D	87	93	parallel
Strand 4	D	216	220	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9C