Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q9M entry

There are 2 chains in PDB entry 6Q9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 741	ILE 1036
B	LEU 742	THR 1041

There are 3 helices in PDB entry 6Q9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	827	830	Right-handed 310
Helix 2	AA2	B	827	830	Right-handed 310
Helix 3	AA3	B	975	979	Right-handed 310

There are 12 sheets in PDB entry 6Q9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	759	first strand
Strand 2	A	762	768	anti-parallel
Strand 3	A	800	804	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	794	first strand
Strand 2	A	778	785	anti-parallel
Strand 3	A	812	820	anti-parallel
Strand 4	A	832	835	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	845	850	first strand
Strand 2	A	857	862	anti-parallel
Strand 3	A	888	891	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	882	first strand
Strand 2	A	870	874	anti-parallel
Strand 3	A	899	906	anti-parallel
Strand 4	A	937	941	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	958	first strand
Strand 2	A	964	970	anti-parallel
Strand 3	A	1003	1007	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	985	first strand
Strand 2	A	1022	1025	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	751	759	first strand
Strand 2	B	762	768	anti-parallel
Strand 3	B	800	804	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	794	first strand
Strand 2	B	778	785	anti-parallel
Strand 3	B	812	820	anti-parallel
Strand 4	B	832	835	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	850	first strand
Strand 2	B	857	862	anti-parallel
Strand 3	B	888	891	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	882	first strand
Strand 2	B	870	874	anti-parallel
Strand 3	B	899	906	anti-parallel
Strand 4	B	937	941	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	952	958	first strand
Strand 2	B	964	970	anti-parallel
Strand 3	B	1003	1007	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	991	996	first strand
Strand 2	B	983	988	anti-parallel
Strand 3	B	1018	1024	anti-parallel
Strand 4	B	1036	1037	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9M