Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q9N entry

There are 2 chains in PDB entry 6Q9N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	GLU 668
B	ASP 27	GLU 668

There are 64 helices in PDB entry 6Q9N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	39	Right-handed alpha
Helix 2	AA2	A	41	48	Right-handed alpha
Helix 3	AA3	A	50	58	Right-handed alpha
Helix 4	AA4	A	58	64	Right-handed alpha
Helix 5	AA5	A	64	74	Right-handed alpha
Helix 6	AA6	A	128	132	Right-handed 310
Helix 7	AA7	A	174	178	Right-handed 310
Helix 8	AA8	A	179	181	Right-handed 310
Helix 9	AA9	A	182	191	Right-handed alpha
Helix 10	AB1	A	193	202	Right-handed alpha
Helix 11	AB2	A	221	232	Right-handed alpha
Helix 12	AB3	A	245	248	Right-handed 310
Helix 13	AB4	A	249	254	Right-handed alpha
Helix 14	AB5	A	260	265	Right-handed alpha
Helix 15	AB6	A	266	270	Right-handed 310
Helix 16	AB7	A	282	287	Right-handed alpha
Helix 17	AB8	A	287	292	Right-handed alpha
Helix 18	AB9	A	329	339	Right-handed alpha
Helix 19	AC1	A	368	374	Right-handed alpha
Helix 20	AC2	A	376	385	Right-handed alpha
Helix 21	AC3	A	401	404	Right-handed 310
Helix 22	AC4	A	405	416	Right-handed alpha
Helix 23	AC5	A	435	439	Right-handed 310
Helix 24	AC6	A	455	462	Right-handed alpha
Helix 25	AC7	A	463	475	Right-handed alpha
Helix 26	AC8	A	475	486	Right-handed alpha
Helix 27	AC9	A	503	507	Right-handed 310
Helix 28	AD1	A	510	519	Right-handed alpha
Helix 29	AD2	A	527	536	Right-handed alpha
Helix 30	AD3	A	537	540	Right-handed 310
Helix 31	AD4	A	564	581	Right-handed alpha
Helix 32	AD5	A	642	657	Right-handed alpha
Helix 33	AD6	A	658	661	Right-handed 310
Helix 34	AD7	B	28	39	Right-handed alpha
Helix 35	AD8	B	41	48	Right-handed alpha
Helix 36	AD9	B	50	58	Right-handed alpha
Helix 37	AE1	B	58	64	Right-handed alpha
Helix 38	AE2	B	64	74	Right-handed alpha
Helix 39	AE3	B	128	132	Right-handed 310
Helix 40	AE4	B	174	178	Right-handed 310
Helix 41	AE5	B	179	181	Right-handed 310
Helix 42	AE6	B	182	190	Right-handed alpha
Helix 43	AE7	B	193	202	Right-handed alpha
Helix 44	AE8	B	224	232	Right-handed alpha
Helix 45	AE9	B	245	248	Right-handed 310
Helix 46	AF1	B	249	254	Right-handed alpha
Helix 47	AF2	B	260	265	Right-handed alpha
Helix 48	AF3	B	282	287	Right-handed alpha
Helix 49	AF4	B	287	292	Right-handed alpha
Helix 50	AF5	B	329	339	Right-handed alpha
Helix 51	AF6	B	368	374	Right-handed alpha
Helix 52	AF7	B	376	385	Right-handed alpha
Helix 53	AF8	B	401	403	Right-handed 310
Helix 54	AF9	B	404	416	Right-handed alpha
Helix 55	AG1	B	435	439	Right-handed 310
Helix 56	AG2	B	455	461	Right-handed alpha
Helix 57	AG3	B	463	486	Right-handed alpha
Helix 58	AG4	B	504	509	Right-handed alpha
Helix 59	AG5	B	510	518	Right-handed alpha
Helix 60	AG6	B	527	536	Right-handed alpha
Helix 61	AG7	B	537	540	Right-handed 310
Helix 62	AG8	B	564	581	Right-handed alpha
Helix 63	AG9	B	642	657	Right-handed alpha
Helix 64	AH1	B	658	661	Right-handed 310

There are 17 sheets in PDB entry 6Q9N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	89	first strand
Strand 2	A	92	103	anti-parallel
Strand 3	A	106	118	anti-parallel
Strand 4	A	123	125	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	147	first strand
Strand 2	A	296	303	anti-parallel
Strand 3	A	308	316	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	217	first strand
Strand 2	A	161	173	anti-parallel
Strand 3	A	234	242	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	217	first strand
Strand 2	A	161	173	anti-parallel
Strand 3	A	154	155	anti-parallel
Strand 4	A	324	325	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	258	first strand
Strand 2	A	277	281	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	363	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	628	634	anti-parallel
Strand 4	A	613	621	anti-parallel
Strand 5	A	594	602	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	427	first strand
Strand 2	A	451	454	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	557	559	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	87	first strand
Strand 2	B	93	103	anti-parallel
Strand 3	B	106	118	anti-parallel
Strand 4	B	123	125	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	147	first strand
Strand 2	B	296	303	anti-parallel
Strand 3	B	309	316	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	217	first strand
Strand 2	B	161	173	anti-parallel
Strand 3	B	234	242	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	217	first strand
Strand 2	B	161	173	anti-parallel
Strand 3	B	154	155	anti-parallel
Strand 4	B	324	325	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	258	first strand
Strand 2	B	277	281	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	363	first strand
Strand 2	B	345	350	anti-parallel
Strand 3	B	628	634	anti-parallel
Strand 4	B	614	621	anti-parallel
Strand 5	B	594	599	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	427	first strand
Strand 2	B	451	454	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	443	444	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	557	559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q9N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9N