Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Q9R entry

There are 2 chains in PDB entry 6Q9R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 31	ALA 754
B	GLU 31	PRO 611

There are 56 helices in PDB entry 6Q9R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	95	112	Right-handed alpha
Helix 3	AA3	A	127	132	Right-handed alpha
Helix 4	AA4	A	179	183	Right-handed 310
Helix 5	AA5	A	206	224	Right-handed alpha
Helix 6	AA6	A	240	248	Right-handed alpha
Helix 7	AA7	A	266	268	Right-handed 310
Helix 8	AA8	A	295	299	Right-handed 310
Helix 9	AA9	A	310	312	Right-handed 310
Helix 10	AB1	A	324	330	Right-handed alpha
Helix 11	AB2	A	330	342	Right-handed alpha
Helix 12	AB3	A	359	364	Right-handed alpha
Helix 13	AB4	A	384	388	Right-handed 310
Helix 14	AB5	A	396	402	Right-handed 310
Helix 15	AB6	A	403	411	Right-handed alpha
Helix 16	AB7	A	434	438	Right-handed 310
Helix 17	AB8	A	472	490	Right-handed alpha
Helix 18	AB9	A	505	510	Right-handed alpha
Helix 19	AC1	A	557	561	Right-handed 310
Helix 20	AC2	A	584	598	Right-handed alpha
Helix 21	AC3	A	611	618	Right-handed alpha
Helix 22	AC4	A	633	638	Right-handed alpha
Helix 23	AC5	A	662	666	Right-handed 310
Helix 24	AC6	A	689	695	Right-handed alpha
Helix 25	AC7	A	695	706	Right-handed alpha
Helix 26	AC8	A	726	731	Right-handed alpha
Helix 27	AC9	A	739	743	Right-handed 310
Helix 28	AD1	A	744	752	Right-handed alpha
Helix 29	AD2	B	55	59	Right-handed 310
Helix 30	AD3	B	94	112	Right-handed alpha
Helix 31	AD4	B	127	132	Right-handed alpha
Helix 32	AD5	B	179	183	Right-handed 310
Helix 33	AD6	B	206	224	Right-handed alpha
Helix 34	AD7	B	240	248	Right-handed alpha
Helix 35	AD8	B	295	299	Right-handed 310
Helix 36	AD9	B	310	312	Right-handed 310
Helix 37	AE1	B	324	330	Right-handed alpha
Helix 38	AE2	B	330	342	Right-handed alpha
Helix 39	AE3	B	359	364	Right-handed alpha
Helix 40	AE4	B	384	388	Right-handed 310
Helix 41	AE5	B	396	402	Right-handed 310
Helix 42	AE6	B	403	411	Right-handed alpha
Helix 43	AE7	B	434	438	Right-handed 310
Helix 44	AE8	B	472	490	Right-handed alpha
Helix 45	AE9	B	507	511	Right-handed 310
Helix 46	AF1	B	557	561	Right-handed 310
Helix 47	AF2	B	584	598	Right-handed alpha
Helix 48	AF3	B	611	618	Right-handed alpha
Helix 49	AF4	B	630	632	Right-handed 310
Helix 50	AF5	B	633	638	Right-handed alpha
Helix 51	AF6	B	662	666	Right-handed 310
Helix 52	AF7	B	689	695	Right-handed alpha
Helix 53	AF8	B	695	707	Right-handed alpha
Helix 54	AF9	B	726	731	Right-handed alpha
Helix 55	AG1	B	739	743	Right-handed 310
Helix 56	AG2	B	744	751	Right-handed alpha

There are 8 sheets in PDB entry 6Q9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	40	46	anti-parallel
Strand 3	A	67	75	anti-parallel
Strand 4	A	81	89	anti-parallel
Strand 5	A	117	122	parallel
Strand 6	A	349	354	anti-parallel
Strand 7	A	314	319	parallel
Strand 8	A	304	309	anti-parallel
Strand 9	A	272	277	anti-parallel
Strand 10	A	284	289	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	138	141	parallel
Strand 3	A	172	176	parallel
Strand 4	A	161	166	anti-parallel
Strand 5	A	188	193	anti-parallel
Strand 6	A	196	201	anti-parallel
Strand 7	A	230	235	parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	651	657	anti-parallel
Strand 3	A	641	648	anti-parallel
Strand 4	A	671	676	anti-parallel
Strand 5	A	679	684	anti-parallel
Strand 6	A	717	721	parallel
Strand 7	A	495	500	anti-parallel
Strand 8	A	458	467	parallel
Strand 9	A	446	455	anti-parallel
Strand 10	A	420	426	anti-parallel
Strand 11	A	429	432	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	517	520	parallel
Strand 3	A	549	554	parallel
Strand 4	A	537	543	anti-parallel
Strand 5	A	566	570	anti-parallel
Strand 6	A	575	579	anti-parallel
Strand 7	A	602	606	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	67	75	anti-parallel
Strand 4	B	81	89	anti-parallel
Strand 5	B	117	122	parallel
Strand 6	B	349	354	anti-parallel
Strand 7	B	314	319	parallel
Strand 8	B	304	309	anti-parallel
Strand 9	B	272	277	anti-parallel
Strand 10	B	284	289	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	138	141	parallel
Strand 3	B	172	176	parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	188	192	anti-parallel
Strand 6	B	196	201	anti-parallel
Strand 7	B	230	235	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	420	426	anti-parallel
Strand 3	B	446	455	anti-parallel
Strand 4	B	458	467	anti-parallel
Strand 5	B	495	500	parallel
Strand 6	B	717	721	anti-parallel
Strand 7	B	680	684	parallel
Strand 8	B	671	675	anti-parallel
Strand 9	B	641	648	anti-parallel
Strand 10	B	651	656	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	517	520	parallel
Strand 3	B	549	554	parallel
Strand 4	B	537	543	anti-parallel
Strand 5	B	566	570	anti-parallel
Strand 6	B	575	579	anti-parallel
Strand 7	B	603	606	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Q9R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9R