Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q9V entry

There are 12 chains in PDB entry 6Q9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -3ASP 5
A
 ASN 8GLU 32
A
 GLY 34TYR 52
A
 CYS 54PHE 62
A
 SER 64TYR 125
A
 ILE 127ASP 138
B
 SER 0ASP 5
B
 LYS 7ARG 19
B
 ARG 21GLU 32
B
 GLY 34TYR 52
B
 CYS 54TYR 125
B
 ILE 127ASP 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6Q9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 22Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
92 96Right-handed 310
Helix 6
AA6
B
14 22Right-handed alpha
Helix 7
AA7
B
23 31Right-handed alpha
Helix 8
AA8
B
92 96Right-handed 310
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There are 4 sheets in PDB entry 6Q9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
132 136anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
98 103anti-parallel
Strand 5
A
86 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
132 136anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
76 77anti-parallel
Strand 3
B
124 127anti-parallel
Strand 4
B
109 114anti-parallel
Strand 5
B
98 103anti-parallel
Strand 6
B
86 91anti-parallel
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