Analysis of interatomic Contacts of Structural Units in PDB entry:
6QAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QAJ entry

There are 2 chains in PDB entry 6QAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -111PHE 405
B
 ASN -111LEU 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6QAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-102 -96Right-handed alpha
Helix 2
AA2
A
-69 -56Right-handed alpha
Helix 3
AA3
A
-48 -26Right-handed alpha
Helix 4
AA4
A
-23 -17Right-handed alpha
Helix 5
AA5
A
-15 0Right-handed alpha
Helix 6
AA6
A
0 5Right-handed alpha
Helix 7
AA7
A
7 16Right-handed alpha
Helix 8
AA8
A
18 27Right-handed alpha
Helix 9
AA9
A
29 35Right-handed alpha
Helix 10
AB1
A
35 49Right-handed alpha
Helix 11
AB2
A
51 61Right-handed alpha
Helix 12
AB3
A
62 64Right-handed 310
Helix 13
AB4
A
229 236Right-handed alpha
Helix 14
AB5
A
244 350Right-handed alpha
Helix 15
AB6
A
351 354Right-handed 310
Helix 16
AB7
A
357 360Right-handed 310
Helix 17
AB8
A
361 370Right-handed alpha
Helix 18
AB9
A
389 398Right-handed alpha
Helix 19
AC1
B
-104 -96Right-handed alpha
Helix 20
AC2
B
-69 -56Right-handed alpha
Helix 21
AC3
B
-48 -26Right-handed alpha
Helix 22
AC4
B
-23 -17Right-handed alpha
Helix 23
AC5
B
-15 0Right-handed alpha
Helix 24
AC6
B
0 5Right-handed alpha
Helix 25
AC7
B
7 16Right-handed alpha
Helix 26
AC8
B
18 28Right-handed alpha
Helix 27
AC9
B
29 35Right-handed alpha
Helix 28
AD1
B
35 49Right-handed alpha
Helix 29
AD2
B
51 62Right-handed alpha
Helix 30
AD3
B
230 236Right-handed alpha
Helix 31
AD4
B
244 351Right-handed alpha
Helix 32
AD5
B
352 354Right-handed 310
Helix 33
AD6
B
357 360Right-handed 310
Helix 34
AD7
B
361 370Right-handed alpha
Helix 35
AD8
B
389 397Right-handed alpha
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There are 8 sheets in PDB entry 6QAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-93 -88first strand
Strand 2
A
-82 -79anti-parallel
Strand 3
A
-76 -73anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
86 88anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
123 125anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
219 221anti-parallel
Strand 3
A
242 243anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-93 -88first strand
Strand 2
B
-82 -79anti-parallel
Strand 3
B
-76 -73anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
86 87anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
123 124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
227 229anti-parallel
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