Analysis of interatomic Contacts of Structural Units in PDB entry:
6QBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QBD entry

There are 2 chains in PDB entry 6QBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 213
B
 ALA 1GLN 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6QBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
18 27Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
65 69Right-handed 310
Helix 5
AA5
A
138 140Right-handed 310
Helix 6
AA6
A
177 179Right-handed 310
Helix 7
AA7
A
180 190Right-handed alpha
Helix 8
AA8
A
202 211Right-handed alpha
Helix 9
AA9
B
4 8Right-handed 310
Helix 10
AB1
B
18 27Right-handed alpha
Helix 11
AB2
B
65 69Right-handed 310
Helix 12
AB3
B
138 140Right-handed 310
Helix 13
AB4
B
177 179Right-handed 310
Helix 14
AB5
B
180 190Right-handed alpha
Helix 15
AB6
B
202 211Right-handed alpha
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There are 8 sheets in PDB entry 6QBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
49 50parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
146 153parallel
Strand 3
A
142 143anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
146 153parallel
Strand 3
A
159 163anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
120 127anti-parallel
Strand 3
A
101 112anti-parallel
Strand 4
A
81 93anti-parallel
Strand 5
A
71 78anti-parallel
Strand 6
A
173 175parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
49 50parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
146 152parallel
Strand 3
B
142 143anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
146 152parallel
Strand 3
B
160 163anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
120 127anti-parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
81 93anti-parallel
Strand 5
B
71 78anti-parallel
Strand 6
B
173 175parallel
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