Analysis of interatomic Contacts of Structural Units in PDB entry:
6QBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QBV entry

There are 4 chains in PDB entry 6QBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 54PRO 211
B
 ARG 54HIS 209
C
 ARG 54PRO 211
D
 ARG 54SER 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6QBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 114Right-handed alpha
Helix 2
AA2
A
124 129Right-handed alpha
Helix 3
AA3
A
129 139Right-handed alpha
Helix 4
AA4
A
158 175Right-handed alpha
Helix 5
AA5
A
179 194Right-handed alpha
Helix 6
AA6
A
203 209Right-handed alpha
Helix 7
AA7
B
98 114Right-handed alpha
Helix 8
AA8
B
124 129Right-handed alpha
Helix 9
AA9
B
129 140Right-handed alpha
Helix 10
AB1
B
156 175Right-handed alpha
Helix 11
AB2
B
179 194Right-handed alpha
Helix 12
AB3
B
203 209Right-handed alpha
Helix 13
AB4
C
98 114Right-handed alpha
Helix 14
AB5
C
124 129Right-handed alpha
Helix 15
AB6
C
129 140Right-handed alpha
Helix 16
AB7
C
156 175Right-handed alpha
Helix 17
AB8
C
179 194Right-handed alpha
Helix 18
AB9
C
203 209Right-handed alpha
Helix 19
AC1
D
98 114Right-handed alpha
Helix 20
AC2
D
124 129Right-handed alpha
Helix 21
AC3
D
129 140Right-handed alpha
Helix 22
AC4
D
157 175Right-handed alpha
Helix 23
AC5
D
179 194Right-handed alpha
Helix 24
AC6
D
203 210Right-handed alpha
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There are 4 sheets in PDB entry 6QBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
74 83anti-parallel
Strand 3
A
61 71anti-parallel
Strand 4
A
118 120parallel
Strand 5
A
142 144parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
74 83anti-parallel
Strand 3
B
61 71anti-parallel
Strand 4
B
118 120parallel
Strand 5
B
142 144parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
74 83anti-parallel
Strand 3
C
61 71anti-parallel
Strand 4
C
118 121parallel
Strand 5
C
142 144parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 94first strand
Strand 2
D
74 83anti-parallel
Strand 3
D
61 71anti-parallel
Strand 4
D
118 121parallel
Strand 5
D
142 144parallel
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