Analysis of interatomic Contacts of Structural Units in PDB entry:
6QBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QBY entry

There are 4 chains in PDB entry 6QBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 48MET 292
B
 SER 26GLN 53
C
 PHE 49LYS 293
D
 GLN 29CYS 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6QBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
76 86Right-handed alpha
Helix 3
AA3
A
106 122Right-handed alpha
Helix 4
AA4
A
138 153Right-handed alpha
Helix 5
AA5
A
157 170Right-handed alpha
Helix 6
AA6
A
224 238Right-handed alpha
Helix 7
AA7
A
275 292Right-handed alpha
Helix 8
AA8
B
27 53Right-handed alpha
Helix 9
AA9
C
59 74Right-handed alpha
Helix 10
AB1
C
76 86Right-handed alpha
Helix 11
AB2
C
106 122Right-handed alpha
Helix 12
AB3
C
138 153Right-handed alpha
Helix 13
AB4
C
157 170Right-handed alpha
Helix 14
AB5
C
224 238Right-handed alpha
Helix 15
AB6
C
275 293Right-handed alpha
Helix 16
AB7
D
30 57Right-handed alpha
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There are 4 sheets in PDB entry 6QBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
128 129parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
203 207anti-parallel
Strand 3
A
189 200anti-parallel
Strand 4
A
176 186anti-parallel
Strand 5
A
242 248anti-parallel
Strand 6
A
267 269anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
128 129parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 222first strand
Strand 2
C
203 207anti-parallel
Strand 3
C
189 200anti-parallel
Strand 4
C
176 186anti-parallel
Strand 5
C
242 248anti-parallel
Strand 6
C
267 269anti-parallel
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