Analysis of interatomic Contacts of Structural Units in PDB entry:
6QCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QCC entry

There are 2 chains in PDB entry 6QCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 370
B
 ASN 378ASP 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6QCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
60 65Right-handed alpha
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
138 145Right-handed alpha
Helix 6
AA6
A
231 238Right-handed alpha
Helix 7
AA7
A
275 279Right-handed 310
Helix 8
AA8
B
430 438Right-handed alpha
Helix 9
AA9
B
458 462Right-handed 310
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There are 9 sheets in PDB entry 6QCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
165 173anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
123 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
112 116anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
B
546 552parallel
Strand 3
B
439 454anti-parallel
Strand 4
B
532 541anti-parallel
Strand 5
B
389 395anti-parallel
Strand 6
B
424 427anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
B
546 552anti-parallel
Strand 3
B
439 454anti-parallel
Strand 4
B
491 500anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 203first strand
Strand 2
A
342 357anti-parallel
Strand 3
A
242 253anti-parallel
Strand 4
A
294 299anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 203first strand
Strand 2
A
342 357anti-parallel
Strand 3
A
242 253anti-parallel
Strand 4
A
308 309anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
324 330anti-parallel
Strand 3
A
262 269anti-parallel
Strand 4
A
284 287anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
227 229anti-parallel
Strand 3
B
556 557anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 418first strand
Strand 2
B
404 409anti-parallel
Strand 3
B
521 526anti-parallel
Strand 4
B
466 471anti-parallel
Strand 5
B
480 486anti-parallel
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