Analysis of interatomic Contacts of Structural Units in PDB entry:
6QCL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QCL entry

There are 3 chains in PDB entry 6QCL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 351	LYS 607
B	GLU 352	LYS 607
C	GLY 347	GLY 536

There are103 helices in PDB entry 6QCL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	374	380	Right-handed alpha
Helix 2	AA2	A	383	394	Right-handed alpha
Helix 3	AA3	A	398	413	Right-handed alpha
Helix 4	AA4	A	419	431	Right-handed alpha
Helix 5	AA5	A	434	444	Right-handed alpha
Helix 6	AA6	A	452	468	Right-handed alpha
Helix 7	AA7	A	500	514	Right-handed alpha
Helix 8	AA8	A	518	526	Right-handed alpha
Helix 9	AA9	A	542	553	Right-handed alpha
Helix 10	AB1	A	556	559	Right-handed 310
Helix 11	AB2	A	560	582	Right-handed alpha
Helix 12	AB3	A	590	592	Right-handed 310
Helix 13	AB4	B	374	380	Right-handed alpha
Helix 14	AB5	B	383	394	Right-handed alpha
Helix 15	AB6	B	398	413	Right-handed alpha
Helix 16	AB7	B	419	431	Right-handed alpha
Helix 17	AB8	B	434	444	Right-handed alpha
Helix 18	AB9	B	452	468	Right-handed alpha
Helix 19	AC1	B	476	483	Right-handed alpha
Helix 20	AC2	B	500	514	Right-handed alpha
Helix 21	AC3	B	518	528	Right-handed alpha
Helix 22	AC4	B	541	553	Right-handed alpha
Helix 23	AC5	B	556	558	Right-handed 310
Helix 24	AC6	B	559	582	Right-handed alpha
Helix 25	AC7	B	590	592	Right-handed 310
Helix 26	AC8	C	374	380	Right-handed alpha
Helix 27	AC9	C	383	394	Right-handed alpha
Helix 28	AD1	C	398	413	Right-handed alpha
Helix 29	AD2	C	419	431	Right-handed alpha
Helix 30	AD3	C	434	445	Right-handed alpha
Helix 31	AD4	C	452	468	Right-handed alpha
Helix 32	AD5	C	471	483	Right-handed alpha
Helix 33	AD6	C	500	513	Right-handed alpha
Helix 34	AD7	C	518	535	Right-handed alpha
Helix 35	AD8	C	541	553	Right-handed alpha
Helix 36	AD9	C	556	560	Right-handed 310
Helix 37	AE1	C	561	582	Right-handed alpha
Helix 38	AE2	C	590	592	Right-handed 310
Helix 39	AE3	D	374	380	Right-handed alpha
Helix 40	AE4	D	383	394	Right-handed alpha
Helix 41	AE5	D	398	413	Right-handed alpha
Helix 42	AE6	D	419	431	Right-handed alpha
Helix 43	AE7	D	434	444	Right-handed alpha
Helix 44	AE8	D	452	468	Right-handed alpha
Helix 45	AE9	D	471	483	Right-handed alpha
Helix 46	AF1	D	500	514	Right-handed alpha
Helix 47	AF2	D	518	535	Right-handed alpha
Helix 48	AF3	D	541	553	Right-handed alpha
Helix 49	AF4	D	556	559	Right-handed 310
Helix 50	AF5	D	560	582	Right-handed alpha
Helix 51	AF6	D	590	592	Right-handed 310
Helix 52	AF7	E	374	380	Right-handed alpha
Helix 53	AF8	E	383	394	Right-handed alpha
Helix 54	AF9	E	398	413	Right-handed alpha
Helix 55	AG1	E	419	431	Right-handed alpha
Helix 56	AG2	E	434	444	Right-handed alpha
Helix 57	AG3	E	453	468	Right-handed alpha
Helix 58	AG4	E	471	483	Right-handed alpha
Helix 59	AG5	E	500	514	Right-handed alpha
Helix 60	AG6	E	518	535	Right-handed alpha
Helix 61	AG7	E	541	553	Right-handed alpha
Helix 62	AG8	E	556	558	Right-handed 310
Helix 63	AG9	E	559	582	Right-handed alpha
Helix 64	AH1	E	590	592	Right-handed 310
Helix 65	AH2	F	374	380	Right-handed alpha
Helix 66	AH3	F	383	394	Right-handed alpha
Helix 67	AH4	F	398	413	Right-handed alpha
Helix 68	AH5	F	419	431	Right-handed alpha
Helix 69	AH6	F	434	444	Right-handed alpha
Helix 70	AH7	F	453	468	Right-handed alpha
Helix 71	AH8	F	471	483	Right-handed alpha
Helix 72	AH9	F	500	514	Right-handed alpha
Helix 73	AI1	F	518	535	Right-handed alpha
Helix 74	AI2	F	541	553	Right-handed alpha
Helix 75	AI3	F	556	558	Right-handed 310
Helix 76	AI4	F	559	582	Right-handed alpha
Helix 77	AI5	F	590	592	Right-handed 310
Helix 78	AI6	G	374	380	Right-handed alpha
Helix 79	AI7	G	383	394	Right-handed alpha
Helix 80	AI8	G	398	413	Right-handed alpha
Helix 81	AI9	G	419	431	Right-handed alpha
Helix 82	AJ1	G	434	444	Right-handed alpha
Helix 83	AJ2	G	453	468	Right-handed alpha
Helix 84	AJ3	G	471	483	Right-handed alpha
Helix 85	AJ4	G	500	514	Right-handed alpha
Helix 86	AJ5	G	518	535	Right-handed alpha
Helix 87	AJ6	G	541	553	Right-handed alpha
Helix 88	AJ7	G	556	558	Right-handed 310
Helix 89	AJ8	G	559	582	Right-handed alpha
Helix 90	AJ9	G	590	592	Right-handed 310
Helix 91	AK1	H	374	380	Right-handed alpha
Helix 92	AK2	H	383	394	Right-handed alpha
Helix 93	AK3	H	398	413	Right-handed alpha
Helix 94	AK4	H	419	431	Right-handed alpha
Helix 95	AK5	H	434	444	Right-handed alpha
Helix 96	AK6	H	453	468	Right-handed alpha
Helix 97	AK7	H	471	483	Right-handed alpha
Helix 98	AK8	H	500	514	Right-handed alpha
Helix 99	AK9	H	518	535	Right-handed alpha
Helix 100	AL1	H	541	553	Right-handed alpha
Helix 101	AL2	H	556	558	Right-handed 310
Helix 102	AL3	H	559	582	Right-handed alpha
Helix 103	AL4	H	590	592	Right-handed 310

There are 18 sheets in PDB entry 6QCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	C	594	596	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	368	369	anti-parallel
Strand 3	A	372	373	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	596	first strand
Strand 2	C	355	357	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	D	594	596	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	368	369	anti-parallel
Strand 3	B	372	373	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	596	first strand
Strand 2	D	355	357	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	G	349	350	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	368	369	anti-parallel
Strand 3	C	372	373	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	H	348	350	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	368	369	anti-parallel
Strand 3	D	372	373	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	357	first strand
Strand 2	G	594	596	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	360	361	first strand
Strand 2	E	368	369	anti-parallel
Strand 3	E	372	373	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	594	596	first strand
Strand 2	G	355	357	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	357	first strand
Strand 2	H	594	596	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	361	first strand
Strand 2	F	368	369	anti-parallel
Strand 3	F	372	373	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	594	596	first strand
Strand 2	H	355	357	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	360	361	first strand
Strand 2	G	368	369	anti-parallel
Strand 3	G	372	373	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	360	361	first strand
Strand 2	H	368	369	anti-parallel
Strand 3	H	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QCL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QCL