Analysis of interatomic Contacts of Structural Units in PDB entry:
6QD1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QD1 entry

There are 4 chains in PDB entry 6QD1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 355
B	MET 1	ALA 355
C	MET 1	ALA 355
D	MET 1	ALA 355

There are 68 helices in PDB entry 6QD1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	17	Right-handed alpha
Helix 2	AA2	A	17	27	Right-handed alpha
Helix 3	AA3	A	28	30	Right-handed 310
Helix 4	AA4	A	34	61	Right-handed alpha
Helix 5	AA5	A	71	76	Right-handed alpha
Helix 6	AA6	A	79	92	Right-handed alpha
Helix 7	AA7	A	94	101	Right-handed 310
Helix 8	AA8	A	105	111	Right-handed alpha
Helix 9	AA9	A	114	149	Right-handed alpha
Helix 10	AB1	A	155	160	Right-handed alpha
Helix 11	AB2	A	162	174	Right-handed alpha
Helix 12	AB3	A	185	192	Right-handed alpha
Helix 13	AB4	A	194	225	Right-handed alpha
Helix 14	AB5	A	242	249	Right-handed alpha
Helix 15	AB6	A	297	302	Right-handed alpha
Helix 16	AB7	A	323	334	Right-handed alpha
Helix 17	AB8	A	334	352	Right-handed alpha
Helix 18	AB9	B	12	17	Right-handed alpha
Helix 19	AC1	B	17	27	Right-handed alpha
Helix 20	AC2	B	28	30	Right-handed 310
Helix 21	AC3	B	34	61	Right-handed alpha
Helix 22	AC4	B	71	76	Right-handed alpha
Helix 23	AC5	B	79	92	Right-handed alpha
Helix 24	AC6	B	94	101	Right-handed 310
Helix 25	AC7	B	105	111	Right-handed alpha
Helix 26	AC8	B	114	149	Right-handed alpha
Helix 27	AC9	B	155	160	Right-handed alpha
Helix 28	AD1	B	162	174	Right-handed alpha
Helix 29	AD2	B	185	192	Right-handed alpha
Helix 30	AD3	B	194	225	Right-handed alpha
Helix 31	AD4	B	242	249	Right-handed alpha
Helix 32	AD5	B	297	302	Right-handed alpha
Helix 33	AD6	B	323	334	Right-handed alpha
Helix 34	AD7	B	334	352	Right-handed alpha
Helix 35	AD8	C	12	17	Right-handed alpha
Helix 36	AD9	C	17	27	Right-handed alpha
Helix 37	AE1	C	28	30	Right-handed 310
Helix 38	AE2	C	34	61	Right-handed alpha
Helix 39	AE3	C	71	76	Right-handed alpha
Helix 40	AE4	C	79	92	Right-handed alpha
Helix 41	AE5	C	94	101	Right-handed 310
Helix 42	AE6	C	105	111	Right-handed alpha
Helix 43	AE7	C	114	149	Right-handed alpha
Helix 44	AE8	C	155	160	Right-handed alpha
Helix 45	AE9	C	162	174	Right-handed alpha
Helix 46	AF1	C	185	192	Right-handed alpha
Helix 47	AF2	C	194	225	Right-handed alpha
Helix 48	AF3	C	242	249	Right-handed alpha
Helix 49	AF4	C	297	302	Right-handed alpha
Helix 50	AF5	C	323	334	Right-handed alpha
Helix 51	AF6	C	334	352	Right-handed alpha
Helix 52	AF7	D	12	17	Right-handed alpha
Helix 53	AF8	D	17	27	Right-handed alpha
Helix 54	AF9	D	28	30	Right-handed 310
Helix 55	AG1	D	34	61	Right-handed alpha
Helix 56	AG2	D	71	76	Right-handed alpha
Helix 57	AG3	D	79	92	Right-handed alpha
Helix 58	AG4	D	94	101	Right-handed 310
Helix 59	AG5	D	105	111	Right-handed alpha
Helix 60	AG6	D	114	149	Right-handed alpha
Helix 61	AG7	D	155	160	Right-handed alpha
Helix 62	AG8	D	162	174	Right-handed alpha
Helix 63	AG9	D	185	192	Right-handed alpha
Helix 64	AH1	D	194	225	Right-handed alpha
Helix 65	AH2	D	242	249	Right-handed alpha
Helix 66	AH3	D	297	302	Right-handed alpha
Helix 67	AH4	D	323	334	Right-handed alpha
Helix 68	AH5	D	334	352	Right-handed alpha

There are 8 sheets in PDB entry 6QD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	317	319	anti-parallel
Strand 3	A	273	277	anti-parallel
Strand 4	A	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	311	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	317	319	anti-parallel
Strand 3	B	273	277	anti-parallel
Strand 4	B	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	311	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	C	317	319	anti-parallel
Strand 3	C	273	277	anti-parallel
Strand 4	C	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	263	first strand
Strand 2	C	311	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	256	first strand
Strand 2	D	317	319	anti-parallel
Strand 3	D	273	277	anti-parallel
Strand 4	D	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	263	first strand
Strand 2	D	311	312	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QD1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QD1