Analysis of interatomic Contacts of Structural Units in PDB entry:
6QD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QD7 entry

There are 12 chains in PDB entry 6QD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 1ARG 108
H
 VAL 2SER 118
A
 SER 32UNK 478
B
 GLU 502VAL 631
C
 SER 32UNK 478
E
 SER 32UNK 478
D
 GLU 502VAL 631
F
 GLU 502VAL 631
X
 VAL 2SER 118
U
 VAL 2SER 118
Z
 GLU 1ARG 108
P
 GLU 1ARG 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 6QD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
79 83Right-handed 310
Helix 2
AA2
H
28 32Right-handed 310
Helix 3
AA3
H
62 65Right-handed 310
Helix 4
AA4
H
74 76Right-handed 310
Helix 5
AA5
H
84 88Right-handed 310
Helix 6
AA6
A
59 61Right-handed 310
Helix 7
AA7
A
71 74Right-handed 310
Helix 8
AA8
A
78 84Right-handed alpha
Helix 9
AA9
A
249 264Right-handed alpha
Helix 10
AB1
B
538 541Right-handed 310
Helix 11
AB2
B
550 552Right-handed 310
Helix 12
AB3
B
553 576Right-handed alpha
Helix 13
AB4
B
583 598Right-handed alpha
Helix 14
AB5
B
612 622Right-handed alpha
Helix 15
AB6
B
623 628Right-handed alpha
Helix 16
AB7
C
59 61Right-handed 310
Helix 17
AB8
C
71 74Right-handed 310
Helix 18
AB9
C
78 84Right-handed alpha
Helix 19
AC1
C
249 264Right-handed alpha
Helix 20
AC2
E
59 61Right-handed 310
Helix 21
AC3
E
71 74Right-handed 310
Helix 22
AC4
E
78 84Right-handed alpha
Helix 23
AC5
E
249 264Right-handed alpha
Helix 24
AC6
D
538 541Right-handed 310
Helix 25
AC7
D
550 552Right-handed 310
Helix 26
AC8
D
553 576Right-handed alpha
Helix 27
AC9
D
583 598Right-handed alpha
Helix 28
AD1
D
612 622Right-handed alpha
Helix 29
AD2
D
623 628Right-handed alpha
Helix 30
AD3
F
538 541Right-handed 310
Helix 31
AD4
F
550 552Right-handed 310
Helix 32
AD5
F
553 576Right-handed alpha
Helix 33
AD6
F
583 598Right-handed alpha
Helix 34
AD7
F
612 622Right-handed alpha
Helix 35
AD8
F
623 628Right-handed alpha
Helix 36
AD9
X
28 32Right-handed 310
Helix 37
AE1
X
62 65Right-handed 310
Helix 38
AE2
X
74 76Right-handed 310
Helix 39
AE3
X
84 88Right-handed 310
Helix 40
AE4
U
28 32Right-handed 310
Helix 41
AE5
U
62 65Right-handed 310
Helix 42
AE6
U
74 76Right-handed 310
Helix 43
AE7
U
84 88Right-handed 310
Helix 44
AE8
Z
79 83Right-handed 310
Helix 45
AE9
P
79 83Right-handed 310
Back to top of page

There are 33 sheets in PDB entry 6QD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
89 96anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
89 96anti-parallel
Strand 4
H
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
63 69anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
159 161anti-parallel
Strand 5
A
165 167anti-parallel
Strand 6
A
96 98anti-parallel
Strand 7
B
580 581parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
B
515 520anti-parallel
Strand 3
B
543 548anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
135 144parallel
Strand 3
A
216 223parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
240 244anti-parallel
Strand 6
A
272 275parallel
Strand 7
A
471 477parallel
Strand 8
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
36 39anti-parallel
Strand 3
C
177 185parallel
Strand 4
C
63 69anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
36 39anti-parallel
Strand 3
C
177 185parallel
Strand 4
C
159 161anti-parallel
Strand 5
C
165 167anti-parallel
Strand 6
C
96 98anti-parallel
Strand 7
D
580 581parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
151 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
D
515 520anti-parallel
Strand 3
D
543 548anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 114first strand
Strand 2
C
135 144parallel
Strand 3
C
216 223parallel
Strand 4
C
231 235anti-parallel
Strand 5
C
240 244anti-parallel
Strand 6
C
272 275parallel
Strand 7
C
471 477parallel
Strand 8
C
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 45first strand
Strand 2
E
36 39anti-parallel
Strand 3
E
177 185parallel
Strand 4
E
63 69anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 45first strand
Strand 2
E
36 39anti-parallel
Strand 3
E
177 185parallel
Strand 4
E
159 161anti-parallel
Strand 5
E
165 167anti-parallel
Strand 6
E
96 98anti-parallel
Strand 7
F
580 581parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 89first strand
Strand 2
E
151 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 103first strand
Strand 2
F
515 520anti-parallel
Strand 3
F
543 548anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 114first strand
Strand 2
E
135 144parallel
Strand 3
E
216 223parallel
Strand 4
E
231 235anti-parallel
Strand 5
E
240 244anti-parallel
Strand 6
E
272 275parallel
Strand 7
E
471 477parallel
Strand 8
E
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
3 7first strand
Strand 2
X
18 25anti-parallel
Strand 3
X
78 83anti-parallel
Strand 4
X
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
10 12first strand
Strand 2
X
112 116parallel
Strand 3
X
89 96anti-parallel
Strand 4
X
34 39anti-parallel
Strand 5
X
45 51anti-parallel
Strand 6
X
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
10 12first strand
Strand 2
X
112 116parallel
Strand 3
X
89 96anti-parallel
Strand 4
X
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
3 7first strand
Strand 2
U
18 25anti-parallel
Strand 3
U
78 83anti-parallel
Strand 4
U
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
10 12first strand
Strand 2
U
112 116parallel
Strand 3
U
89 96anti-parallel
Strand 4
U
34 39anti-parallel
Strand 5
U
45 51anti-parallel
Strand 6
U
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
10 12first strand
Strand 2
U
112 116parallel
Strand 3
U
89 96anti-parallel
Strand 4
U
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
4 7first strand
Strand 2
Z
19 25anti-parallel
Strand 3
Z
70 75anti-parallel
Strand 4
Z
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
10 13first strand
Strand 2
Z
102 106parallel
Strand 3
Z
84 90anti-parallel
Strand 4
Z
33 38anti-parallel
Strand 5
Z
45 49anti-parallel
Strand 6
Z
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
10 13first strand
Strand 2
Z
102 106parallel
Strand 3
Z
84 90anti-parallel
Strand 4
Z
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
4 7first strand
Strand 2
P
19 25anti-parallel
Strand 3
P
70 75anti-parallel
Strand 4
P
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 13first strand
Strand 2
P
102 106parallel
Strand 3
P
84 90anti-parallel
Strand 4
P
33 38anti-parallel
Strand 5
P
45 49anti-parallel
Strand 6
P
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 13first strand
Strand 2
P
102 106parallel
Strand 3
P
84 90anti-parallel
Strand 4
P
97 98anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il