Analysis of interatomic Contacts of Structural Units in PDB entry:
6QD8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QD8 entry

There are 12 chains in PDB entry 6QD8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Z	ILE 2	GLU 105
A	SER 32	UNK 478
Y	ILE 2	GLU 105
B	GLU 502	VAL 631
L	ILE 2	GLU 105
H	VAL 2	SER 115
C	SER 32	UNK 478
E	SER 32	UNK 478
F	GLU 502	VAL 631
D	GLU 502	VAL 631
W	VAL 2	SER 115
Q	VAL 2	SER 115

There are 27 helices in PDB entry 6QD8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	61	Right-handed 310
Helix 2	AA2	A	71	74	Right-handed 310
Helix 3	AA3	A	78	84	Right-handed alpha
Helix 4	AA4	A	249	264	Right-handed alpha
Helix 5	AA5	B	538	541	Right-handed 310
Helix 6	AA6	B	550	552	Right-handed 310
Helix 7	AA7	B	553	576	Right-handed alpha
Helix 8	AA8	B	583	598	Right-handed alpha
Helix 9	AA9	B	612	622	Right-handed alpha
Helix 10	AB1	C	59	61	Right-handed 310
Helix 11	AB2	C	71	74	Right-handed 310
Helix 12	AB3	C	78	84	Right-handed alpha
Helix 13	AB4	C	249	264	Right-handed alpha
Helix 14	AB5	E	59	61	Right-handed 310
Helix 15	AB6	E	71	74	Right-handed 310
Helix 16	AB7	E	78	84	Right-handed alpha
Helix 17	AB8	E	249	264	Right-handed alpha
Helix 18	AB9	F	538	541	Right-handed 310
Helix 19	AC1	F	550	552	Right-handed 310
Helix 20	AC2	F	553	576	Right-handed alpha
Helix 21	AC3	F	583	598	Right-handed alpha
Helix 22	AC4	F	612	622	Right-handed alpha
Helix 23	AC5	D	538	541	Right-handed 310
Helix 24	AC6	D	550	552	Right-handed 310
Helix 25	AC7	D	553	576	Right-handed alpha
Helix 26	AC8	D	583	598	Right-handed alpha
Helix 27	AC9	D	612	622	Right-handed alpha

There are 27 sheets in PDB entry 6QD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	4	7	first strand
Strand 2	Z	18	25	anti-parallel
Strand 3	Z	70	76	anti-parallel
Strand 4	Z	62	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	53	54	first strand
Strand 2	Z	45	49	anti-parallel
Strand 3	Z	34	38	anti-parallel
Strand 4	Z	85	89	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	63	69	anti-parallel
Strand 5	A	101	103	parallel
Strand 6	B	515	520	anti-parallel
Strand 7	B	543	548	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	177	185	parallel
Strand 4	A	159	161	anti-parallel
Strand 5	A	165	167	anti-parallel
Strand 6	A	96	98	anti-parallel
Strand 7	B	580	581	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	151	154	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	114	first strand
Strand 2	A	135	144	parallel
Strand 3	A	216	223	parallel
Strand 4	A	231	235	anti-parallel
Strand 5	A	240	243	anti-parallel
Strand 6	A	272	275	parallel
Strand 7	A	471	477	parallel
Strand 8	A	306	309	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	4	7	first strand
Strand 2	Y	18	25	anti-parallel
Strand 3	Y	70	76	anti-parallel
Strand 4	Y	62	67	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	53	54	first strand
Strand 2	Y	45	49	anti-parallel
Strand 3	Y	34	38	anti-parallel
Strand 4	Y	85	89	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	70	76	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	85	89	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	104	105	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	110	112	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	101	103	parallel
Strand 6	D	515	520	anti-parallel
Strand 7	D	543	548	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	36	39	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	D	580	581	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	114	first strand
Strand 2	C	135	144	parallel
Strand 3	C	216	223	parallel
Strand 4	C	231	235	anti-parallel
Strand 5	C	240	243	anti-parallel
Strand 6	C	272	275	parallel
Strand 7	C	471	477	parallel
Strand 8	C	306	309	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	63	69	anti-parallel
Strand 5	E	101	103	parallel
Strand 6	F	515	520	anti-parallel
Strand 7	F	543	548	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	159	161	anti-parallel
Strand 5	E	165	167	anti-parallel
Strand 6	E	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	114	first strand
Strand 2	E	135	144	parallel
Strand 3	E	216	223	parallel
Strand 4	E	231	235	anti-parallel
Strand 5	E	240	243	anti-parallel
Strand 6	E	272	275	parallel
Strand 7	E	471	477	parallel
Strand 8	E	306	309	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	7	first strand
Strand 2	W	18	25	anti-parallel
Strand 3	W	78	83	anti-parallel
Strand 4	W	68	73	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	59	60	first strand
Strand 2	W	47	52	anti-parallel
Strand 3	W	34	40	anti-parallel
Strand 4	W	92	99	anti-parallel
Strand 5	W	104	105	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	59	60	first strand
Strand 2	W	47	52	anti-parallel
Strand 3	W	34	40	anti-parallel
Strand 4	W	92	99	anti-parallel
Strand 5	W	110	112	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	7	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	78	83	anti-parallel
Strand 4	Q	68	73	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	59	60	first strand
Strand 2	Q	47	52	anti-parallel
Strand 3	Q	34	40	anti-parallel
Strand 4	Q	92	99	anti-parallel
Strand 5	Q	104	105	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	59	60	first strand
Strand 2	Q	47	52	anti-parallel
Strand 3	Q	34	40	anti-parallel
Strand 4	Q	92	99	anti-parallel
Strand 5	Q	110	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QD8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QD8