Analysis of interatomic Contacts of Structural Units in PDB entry:
6QDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QDI entry

There is 1 chain in PDB entry 6QDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 20ARG 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6QDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 155Right-handed 310
Helix 2
AA2
A
307 309Right-handed 310
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There are 6 sheets in PDB entry 6QDI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
122 132anti-parallel
Strand 4
A
63 73anti-parallel
Strand 5
A
23 28anti-parallel
Strand 6
A
36 42anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
157 159anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 117first strand
Strand 2
A
78 87anti-parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
46 50anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 255first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
276 285anti-parallel
Strand 4
A
217 226anti-parallel
Strand 5
A
176 181anti-parallel
Strand 6
A
189 195anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
269 271anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
234 240anti-parallel
Strand 3
A
290 297anti-parallel
Strand 4
A
199 203anti-parallel
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