Analysis of interatomic Contacts of Structural Units in PDB entry:
6QDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QDJ entry

There is 1 chain in PDB entry 6QDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6QDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed 310
Helix 2
AA2
A
15 23Right-handed alpha
Helix 3
AA3
A
70 72Right-handed 310
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
93 107Right-handed alpha
Helix 7
AA7
A
131 139Right-handed alpha
Helix 8
AA8
A
142 146Right-handed 310
Helix 9
AA9
A
149 165Right-handed alpha
Helix 10
AB1
A
179 195Right-handed alpha
Helix 11
AB2
A
213 229Right-handed alpha
Helix 12
AB3
A
267 272Right-handed 310
Helix 13
AB4
A
282 289Right-handed alpha
Helix 14
AB5
A
292 299Right-handed alpha
Helix 15
AB6
A
304 308Right-handed 310
Helix 16
AB7
A
322 337Right-handed alpha
Helix 17
AB8
A
340 358Right-handed alpha
Helix 18
AB9
A
376 387Right-handed alpha
Helix 19
AC1
A
389 399Right-handed alpha
Helix 20
AC2
A
414 445Right-handed alpha
Helix 21
AC3
A
471 504Right-handed alpha
Helix 22
AC4
A
511 515Right-handed 310
Helix 23
AC5
A
516 525Right-handed alpha
Helix 24
AC6
A
528 537Right-handed alpha
Helix 25
AC7
A
543 556Right-handed alpha
Helix 26
AC8
A
592 599Right-handed alpha
Helix 27
AC9
A
602 611Right-handed alpha
Helix 28
AD1
A
615 622Right-handed alpha
Helix 29
AD2
A
627 632Right-handed alpha
Helix 30
AD3
A
653 670Right-handed alpha
Helix 31
AD4
A
692 703Right-handed alpha
Helix 32
AD5
A
704 715Right-handed alpha
Helix 33
AD6
A
722 730Right-handed alpha
Helix 34
AD7
A
733 738Right-handed alpha
Helix 35
AD8
A
742 758Right-handed alpha
Helix 36
AD9
A
761 763Right-handed 310
Helix 37
AE1
A
777 790Right-handed alpha
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There are 7 sheets in PDB entry 6QDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
41 51anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
73 74anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
673 680parallel
Strand 4
A
168 173parallel
Strand 5
A
454 460parallel
Strand 6
A
243 250anti-parallel
Strand 7
A
256 264anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
239 240anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
372 373anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
408 410anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 563first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
584 588anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 721first strand
Strand 2
A
771 774anti-parallel
Strand 3
A
765 767anti-parallel
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