Analysis of interatomic Contacts of Structural Units in PDB entry:
6QDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QDM entry

There are 2 chains in PDB entry 6QDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 136UNK 939
B
THR 136LEU 915
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 6QDM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
136 148Right-handed alpha
Helix 2
AA2
A
156 174Right-handed alpha
Helix 3
AA3
A
174 183Right-handed alpha
Helix 4
AA4
A
186 196Right-handed alpha
Helix 5
AA5
A
201 216Right-handed alpha
Helix 6
AA6
A
218 227Right-handed alpha
Helix 7
AA7
A
232 242Right-handed alpha
Helix 8
AA8
A
243 247Right-handed 310
Helix 9
AA9
A
249 268Right-handed alpha
Helix 10
AB1
A
279 285Right-handed alpha
Helix 11
AB2
A
286 301Right-handed alpha
Helix 12
AB3
A
307 323Right-handed alpha
Helix 13
AB4
A
332 340Right-handed alpha
Helix 14
AB5
A
341 351Right-handed alpha
Helix 15
AB6
A
362 380Right-handed alpha
Helix 16
AB7
A
382 403Right-handed alpha
Helix 17
AB8
A
407 426Right-handed alpha
Helix 18
AB9
A
428 437Right-handed alpha
Helix 19
AC1
A
440 451Right-handed alpha
Helix 20
AC2
A
453 468Right-handed alpha
Helix 21
AC3
A
474 479Right-handed alpha
Helix 22
AC4
A
481 489Right-handed alpha
Helix 23
AC5
A
493 502Right-handed alpha
Helix 24
AC6
A
526 538Right-handed alpha
Helix 25
AC7
A
543 558Right-handed alpha
Helix 26
AC8
A
560 569Right-handed alpha
Helix 27
AC9
A
571 585Right-handed alpha
Helix 28
AD1
A
588 600Right-handed alpha
Helix 29
AD2
A
609 618Right-handed alpha
Helix 30
AD3
A
627 630Right-handed 310
Helix 31
AD4
A
631 645Right-handed alpha
Helix 32
AD5
A
646 654Right-handed alpha
Helix 33
AD6
A
659 674Right-handed alpha
Helix 34
AD7
A
676 686Right-handed alpha
Helix 35
AD8
A
687 699Right-handed alpha
Helix 36
AD9
A
700 715Right-handed alpha
Helix 37
AE1
A
719 724Right-handed alpha
Helix 38
AE2
A
726 731Right-handed alpha
Helix 39
AE3
A
732 740Right-handed alpha
Helix 40
AE4
A
748 760Right-handed alpha
Helix 41
AE5
A
763 772Right-handed alpha
Helix 42
AE6
A
775 784Right-handed alpha
Helix 43
AE7
A
789 802Right-handed alpha
Helix 44
AE8
A
805 814Right-handed alpha
Helix 45
AE9
A
818 829Right-handed alpha
Helix 46
AF1
A
833 847Right-handed alpha
Helix 47
AF2
A
849 860Right-handed alpha
Helix 48
AF3
A
862 872Right-handed alpha
Helix 49
AF4
A
876 893Right-handed alpha
Helix 50
AF5
A
893 902Right-handed alpha
Helix 51
AF6
A
905 913Right-handed alpha
Helix 52
AF7
A
927 937Right-handed alpha
Helix 53
AF8
B
137 148Right-handed alpha
Helix 54
AF9
B
156 174Right-handed alpha
Helix 55
AG1
B
174 183Right-handed alpha
Helix 56
AG2
B
186 196Right-handed alpha
Helix 57
AG3
B
201 216Right-handed alpha
Helix 58
AG4
B
218 227Right-handed alpha
Helix 59
AG5
B
232 242Right-handed alpha
Helix 60
AG6
B
243 246Right-handed 310
Helix 61
AG7
B
249 268Right-handed alpha
Helix 62
AG8
B
279 286Right-handed alpha
Helix 63
AG9
B
286 301Right-handed alpha
Helix 64
AH1
B
307 322Right-handed alpha
Helix 65
AH2
B
323 327Right-handed 310
Helix 66
AH3
B
332 340Right-handed alpha
Helix 67
AH4
B
341 351Right-handed alpha
Helix 68
AH5
B
364 380Right-handed alpha
Helix 69
AH6
B
382 404Right-handed alpha
Helix 70
AH7
B
407 427Right-handed alpha
Helix 71
AH8
B
428 437Right-handed alpha
Helix 72
AH9
B
440 451Right-handed alpha
Helix 73
AI1
B
453 468Right-handed alpha
Helix 74
AI2
B
481 489Right-handed alpha
Helix 75
AI3
B
493 508Right-handed alpha
Helix 76
AI4
B
526 538Right-handed alpha
Helix 77
AI5
B
543 558Right-handed alpha
Helix 78
AI6
B
560 570Right-handed alpha
Helix 79
AI7
B
571 585Right-handed alpha
Helix 80
AI8
B
588 601Right-handed alpha
Helix 81
AI9
B
631 645Right-handed alpha
Helix 82
AJ1
B
646 653Right-handed alpha
Helix 83
AJ2
B
659 674Right-handed alpha
Helix 84
AJ3
B
679 686Right-handed alpha
Helix 85
AJ4
B
687 699Right-handed alpha
Helix 86
AJ5
B
700 715Right-handed alpha
Helix 87
AJ6
B
719 724Right-handed alpha
Helix 88
AJ7
B
726 731Right-handed alpha
Helix 89
AJ8
B
732 737Right-handed alpha
Helix 90
AJ9
B
747 760Right-handed alpha
Helix 91
AK1
B
763 773Right-handed alpha
Helix 92
AK2
B
775 783Right-handed alpha
Helix 93
AK3
B
790 802Right-handed alpha
Helix 94
AK4
B
805 814Right-handed alpha
Helix 95
AK5
B
818 829Right-handed alpha
Helix 96
AK6
B
833 847Right-handed alpha
Helix 97
AK7
B
849 860Right-handed alpha
Helix 98
AK8
B
862 872Right-handed alpha
Helix 99
AK9
B
875 893Right-handed alpha
Helix 100
AL1
B
894 902Right-handed alpha
Helix 101
AL2
B
905 914Right-handed alpha
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There are no sheets in PDB entry 6QDM

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