Analysis of interatomic Contacts of Structural Units in PDB entry:
6QDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QDX entry

There are 4 chains in PDB entry 6QDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLU 280
B
 SER 3GLU 280
C
 SER 3GLU 280
D
 SER 3GLU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6QDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 30Right-handed alpha
Helix 2
AA2
A
59 68Right-handed 310
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
78 88Right-handed alpha
Helix 5
AA5
A
99 108Right-handed alpha
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
143 151Right-handed alpha
Helix 8
AA8
A
171 187Right-handed alpha
Helix 9
AA9
A
200 214Right-handed alpha
Helix 10
AB1
A
248 265Right-handed alpha
Helix 11
AB2
B
12 30Right-handed alpha
Helix 12
AB3
B
59 68Right-handed 310
Helix 13
AB4
B
75 77Right-handed 310
Helix 14
AB5
B
78 88Right-handed alpha
Helix 15
AB6
B
99 108Right-handed alpha
Helix 16
AB7
B
123 131Right-handed alpha
Helix 17
AB8
B
143 151Right-handed alpha
Helix 18
AB9
B
171 187Right-handed alpha
Helix 19
AC1
B
200 214Right-handed alpha
Helix 20
AC2
B
248 265Right-handed alpha
Helix 21
AC3
C
12 30Right-handed alpha
Helix 22
AC4
C
59 68Right-handed 310
Helix 23
AC5
C
75 77Right-handed 310
Helix 24
AC6
C
78 88Right-handed alpha
Helix 25
AC7
C
99 108Right-handed alpha
Helix 26
AC8
C
123 131Right-handed alpha
Helix 27
AC9
C
146 151Right-handed alpha
Helix 28
AD1
C
171 187Right-handed alpha
Helix 29
AD2
C
200 214Right-handed alpha
Helix 30
AD3
C
248 265Right-handed alpha
Helix 31
AD4
D
12 30Right-handed alpha
Helix 32
AD5
D
59 68Right-handed 310
Helix 33
AD6
D
75 77Right-handed 310
Helix 34
AD7
D
78 88Right-handed alpha
Helix 35
AD8
D
99 108Right-handed alpha
Helix 36
AD9
D
122 131Right-handed alpha
Helix 37
AE1
D
143 151Right-handed alpha
Helix 38
AE2
D
171 187Right-handed alpha
Helix 39
AE3
D
200 214Right-handed alpha
Helix 40
AE4
D
248 265Right-handed alpha
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There are 8 sheets in PDB entry 6QDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
47 49parallel
Strand 3
A
96 98anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
113 117parallel
Strand 3
A
37 40parallel
Strand 4
A
159 163parallel
Strand 5
A
191 198parallel
Strand 6
A
237 243anti-parallel
Strand 7
A
219 225anti-parallel
Strand 8
A
271 278anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
113 117parallel
Strand 3
B
37 40parallel
Strand 4
B
159 163parallel
Strand 5
B
191 198parallel
Strand 6
B
237 243anti-parallel
Strand 7
B
219 225anti-parallel
Strand 8
B
271 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
96 98anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
113 117parallel
Strand 3
C
37 40parallel
Strand 4
C
159 163parallel
Strand 5
C
191 198parallel
Strand 6
C
237 243anti-parallel
Strand 7
C
219 225anti-parallel
Strand 8
C
271 278anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 49first strand
Strand 2
C
96 98anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 140first strand
Strand 2
D
113 117parallel
Strand 3
D
37 40parallel
Strand 4
D
159 163parallel
Strand 5
D
191 198parallel
Strand 6
D
237 243anti-parallel
Strand 7
D
219 225anti-parallel
Strand 8
D
271 278anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 49first strand
Strand 2
D
96 98anti-parallel
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