Analysis of interatomic Contacts of Structural Units in PDB entry:
6QE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QE5 entry

There are 2 chains in PDB entry 6QE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 280
B
 MET 1GLU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6QE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
12 30Right-handed alpha
Helix 3
AA3
A
59 68Right-handed 310
Helix 4
AA4
A
75 77Right-handed 310
Helix 5
AA5
A
78 88Right-handed alpha
Helix 6
AA6
A
99 108Right-handed alpha
Helix 7
AA7
A
122 131Right-handed alpha
Helix 8
AA8
A
143 151Right-handed alpha
Helix 9
AA9
A
171 187Right-handed alpha
Helix 10
AB1
A
200 214Right-handed alpha
Helix 11
AB2
A
248 265Right-handed alpha
Helix 12
AB3
B
5 9Right-handed 310
Helix 13
AB4
B
12 30Right-handed alpha
Helix 14
AB5
B
59 68Right-handed 310
Helix 15
AB6
B
75 77Right-handed 310
Helix 16
AB7
B
78 88Right-handed alpha
Helix 17
AB8
B
99 108Right-handed alpha
Helix 18
AB9
B
122 132Right-handed alpha
Helix 19
AC1
B
143 151Right-handed alpha
Helix 20
AC2
B
171 187Right-handed alpha
Helix 21
AC3
B
200 213Right-handed alpha
Helix 22
AC4
B
248 265Right-handed alpha
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There are 4 sheets in PDB entry 6QE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
113 117parallel
Strand 3
A
37 40parallel
Strand 4
A
159 163parallel
Strand 5
A
191 198parallel
Strand 6
A
237 243anti-parallel
Strand 7
A
219 225anti-parallel
Strand 8
A
271 278anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
96 98anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
113 117parallel
Strand 3
B
37 40parallel
Strand 4
B
159 163parallel
Strand 5
B
191 198parallel
Strand 6
B
237 243anti-parallel
Strand 7
B
219 225anti-parallel
Strand 8
B
271 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
96 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il