Analysis of interatomic Contacts of Structural Units in PDB entry:
6QE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QE7 entry

There are 3 chains in PDB entry 6QE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 18	ASP 308
B	HIS 20	ASP 308
C	HIS 20	ASP 308

There are 6 helices in PDB entry 6QE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	154	Right-handed 310
Helix 2	AA2	A	301	303	Right-handed 310
Helix 3	AA3	B	152	154	Right-handed 310
Helix 4	AA4	B	301	303	Right-handed 310
Helix 5	AA5	C	152	154	Right-handed 310
Helix 6	AA6	C	301	303	Right-handed 310

There are 24 sheets in PDB entry 6QE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	42	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	63	71	anti-parallel
Strand 4	A	122	130	anti-parallel
Strand 5	A	89	93	anti-parallel
Strand 6	A	96	101	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	42	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	63	71	anti-parallel
Strand 4	A	156	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	77	86	anti-parallel
Strand 4	A	108	116	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	149	150	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	210	219	anti-parallel
Strand 4	A	271	280	anti-parallel
Strand 5	A	236	241	anti-parallel
Strand 6	A	244	249	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	210	219	anti-parallel
Strand 4	A	305	306	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	225	233	anti-parallel
Strand 4	A	257	265	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	298	299	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	42	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	122	130	anti-parallel
Strand 5	B	89	93	anti-parallel
Strand 6	B	96	101	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	42	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	156	158	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	135	142	anti-parallel
Strand 3	B	77	86	anti-parallel
Strand 4	B	108	116	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	135	142	anti-parallel
Strand 3	B	149	150	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	190	first strand
Strand 2	B	171	176	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	271	278	anti-parallel
Strand 5	B	236	241	anti-parallel
Strand 6	B	244	249	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	190	first strand
Strand 2	B	171	176	anti-parallel
Strand 3	B	212	219	anti-parallel
Strand 4	B	305	306	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	198	first strand
Strand 2	B	284	292	anti-parallel
Strand 3	B	225	233	anti-parallel
Strand 4	B	257	265	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	198	first strand
Strand 2	B	284	292	anti-parallel
Strand 3	B	298	299	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	42	first strand
Strand 2	C	23	28	anti-parallel
Strand 3	C	63	71	anti-parallel
Strand 4	C	122	130	anti-parallel
Strand 5	C	89	93	anti-parallel
Strand 6	C	96	101	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	42	first strand
Strand 2	C	23	28	anti-parallel
Strand 3	C	63	71	anti-parallel
Strand 4	C	156	158	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	135	142	anti-parallel
Strand 3	C	77	86	anti-parallel
Strand 4	C	108	116	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	135	142	anti-parallel
Strand 3	C	149	150	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	211	219	anti-parallel
Strand 4	C	271	279	anti-parallel
Strand 5	C	236	241	anti-parallel
Strand 6	C	244	249	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	211	219	anti-parallel
Strand 4	C	305	306	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	198	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	225	233	anti-parallel
Strand 4	C	257	265	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	198	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QE7