Analysis of interatomic Contacts of Structural Units in PDB entry:
6QEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QEE entry

There are 3 chains in PDB entry 6QEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31GLY 1275
B
 GLN 1CYS 220
C
 GLU 1THR 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6QEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
44 62Right-handed alpha
Helix 3
AA3
A
63 90Right-handed alpha
Helix 4
AA4
A
97 137Right-handed alpha
Helix 5
AA5
A
140 156Right-handed alpha
Helix 6
AA6
A
158 165Right-handed alpha
Helix 7
AA7
A
167 186Right-handed alpha
Helix 8
AA8
A
187 210Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
220 237Right-handed alpha
Helix 11
AB2
A
246 257Right-handed alpha
Helix 12
AB3
A
260 266Right-handed alpha
Helix 13
AB4
A
269 320Right-handed alpha
Helix 14
AB5
A
321 323Right-handed 310
Helix 15
AB6
A
326 347Right-handed alpha
Helix 16
AB7
A
348 370Right-handed alpha
Helix 17
AB8
A
433 439Right-handed alpha
Helix 18
AB9
A
461 469Right-handed alpha
Helix 19
AC1
A
482 489Right-handed alpha
Helix 20
AC2
A
495 506Right-handed alpha
Helix 21
AC3
A
508 513Right-handed alpha
Helix 22
AC4
A
531 546Right-handed alpha
Helix 23
AC5
A
561 576Right-handed alpha
Helix 24
AC6
A
610 618Right-handed alpha
Helix 25
AC7
A
619 628Right-handed alpha
Helix 26
AC8
A
695 702Right-handed alpha
Helix 27
AC9
A
706 721Right-handed alpha
Helix 28
AD1
A
722 737Right-handed alpha
Helix 29
AD2
A
743 797Right-handed alpha
Helix 30
AD3
A
800 805Right-handed 310
Helix 31
AD4
A
809 819Right-handed alpha
Helix 32
AD5
A
820 825Right-handed alpha
Helix 33
AD6
A
828 852Right-handed alpha
Helix 34
AD7
A
853 879Right-handed alpha
Helix 35
AD8
A
884 888Right-handed 310
Helix 36
AD9
A
890 902Right-handed alpha
Helix 37
AE1
A
902 910Right-handed alpha
Helix 38
AE2
A
911 964Right-handed alpha
Helix 39
AE3
A
969 994Right-handed alpha
Helix 40
AE4
A
997 1012Right-handed alpha
Helix 41
AE5
A
1076 1083Right-handed alpha
Helix 42
AE6
A
1104 1111Right-handed alpha
Helix 43
AE7
A
1125 1131Right-handed alpha
Helix 44
AE8
A
1132 1134Right-handed 310
Helix 45
AE9
A
1140 1150Right-handed alpha
Helix 46
AF1
A
1153 1159Right-handed alpha
Helix 47
AF2
A
1176 1189Right-handed alpha
Helix 48
AF3
A
1209 1221Right-handed alpha
Helix 49
AF4
A
1255 1262Right-handed alpha
Helix 50
AF5
A
1264 1275Right-handed alpha
Helix 51
AF6
B
127 134Right-handed alpha
Helix 52
AF7
B
191 195Right-handed 310
Helix 53
AF8
C
162 166Right-handed 310
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There are 15 sheets in PDB entry 6QEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
391 392anti-parallel
Strand 3
A
451 452anti-parallel
Strand 4
A
455 456anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
407 412anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
552 554parallel
Strand 3
A
582 584parallel
Strand 4
A
422 424parallel
Strand 5
A
596 599parallel
Strand 6
A
607 609anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1058first strand
Strand 2
A
1035 1040anti-parallel
Strand 3
A
1090 1093anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1066first strand
Strand 2
A
1226 1229parallel
Strand 3
A
1196 1199parallel
Strand 4
A
1113 1115parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1245 1246first strand
Strand 2
A
1249 1250anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
76 80anti-parallel
Strand 3
B
69 71anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
90 92anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
135 145anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
165 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
150 156anti-parallel
Strand 3
B
198 204anti-parallel
Strand 4
B
213 215anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
70 73anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
92 99anti-parallel
Strand 5
C
116 118anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
C
144 152anti-parallel
Strand 3
C
183 186anti-parallel
Strand 4
C
178 180anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
C
144 152anti-parallel
Strand 3
C
189 193anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 208first strand
Strand 2
C
213 215anti-parallel
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