Analysis of interatomic Contacts of Structural Units in PDB entry:
6QEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QEV entry

There is 1 chain in PDB entry 6QEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 339	VAL 1640

There are 35 helices in PDB entry 6QEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	392	394	Right-handed 310
Helix 2	AA2	B	415	418	Right-handed 310
Helix 3	AA3	B	609	618	Right-handed alpha
Helix 4	AA4	B	626	633	Right-handed 310
Helix 5	AA5	B	649	665	Right-handed alpha
Helix 6	AA6	B	696	710	Right-handed alpha
Helix 7	AA7	B	758	765	Right-handed alpha
Helix 8	AA8	B	766	780	Right-handed alpha
Helix 9	AA9	B	801	815	Right-handed alpha
Helix 10	AB1	B	834	839	Right-handed alpha
Helix 11	AB2	B	852	860	Right-handed alpha
Helix 12	AB3	B	861	863	Right-handed 310
Helix 13	AB4	B	870	878	Right-handed 310
Helix 14	AB5	B	892	896	Right-handed 310
Helix 15	AB6	B	898	917	Right-handed alpha
Helix 16	AB7	B	931	935	Right-handed 310
Helix 17	AB8	B	945	949	Right-handed 310
Helix 18	AB9	B	973	977	Right-handed 310
Helix 19	AC1	B	1021	1024	Right-handed 310
Helix 20	AC2	B	1042	1046	Right-handed 310
Helix 21	AC3	B	1114	1119	Right-handed alpha
Helix 22	AC4	B	1429	1434	Right-handed alpha
Helix 23	AC5	B	1455	1471	Right-handed alpha
Helix 24	AC6	B	1472	1474	Right-handed 310
Helix 25	AC7	B	1478	1498	Right-handed alpha
Helix 26	AC8	B	1502	1536	Right-handed alpha
Helix 27	AC9	B	1537	1547	Right-handed alpha
Helix 28	AD1	B	1560	1569	Right-handed alpha
Helix 29	AD2	B	1570	1581	Right-handed alpha
Helix 30	AD3	B	1593	1602	Right-handed alpha
Helix 31	AD4	B	1603	1613	Right-handed alpha
Helix 32	AD5	B	1626	1634	Right-handed alpha
Helix 33	AD6	B	1636	1646	Right-handed alpha
Helix 34	AD7	B	1659	1668	Right-handed alpha
Helix 35	AD8	B	1669	1682	Right-handed alpha

There are 14 sheets in PDB entry 6QEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	350	355	anti-parallel
Strand 3	B	361	366	anti-parallel
Strand 4	B	371	373	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	381	384	anti-parallel
Strand 3	B	462	464	anti-parallel
Strand 4	B	570	571	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	402	first strand
Strand 2	B	405	414	anti-parallel
Strand 3	B	419	430	anti-parallel
Strand 4	B	433	443	anti-parallel
Strand 5	B	593	599	anti-parallel
Strand 6	B	522	528	anti-parallel
Strand 7	B	514	519	anti-parallel
Strand 8	B	481	485	anti-parallel
Strand 9	B	496	500	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	474	first strand
Strand 2	B	560	567	anti-parallel
Strand 3	B	550	557	anti-parallel
Strand 4	B	510	512	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	577	first strand
Strand 2	B	583	586	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	640	first strand
Strand 2	B	669	674	parallel
Strand 3	B	713	719	parallel
Strand 4	B	785	788	parallel
Strand 5	B	818	821	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	753	756	anti-parallel
Strand 3	B	746	749	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	925	first strand
Strand 2	B	951	955	anti-parallel
Strand 3	B	961	966	anti-parallel
Strand 4	B	979	983	anti-parallel
Strand 5	B	986	991	anti-parallel
Strand 6	B	1005	1010	anti-parallel
Strand 7	B	1026	1031	anti-parallel
Strand 8	B	1084	1087	anti-parallel
Strand 9	B	1050	1057	anti-parallel
Strand 10	B	1060	1068	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1035	1040	first strand
Strand 2	B	1073	1078	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1121	1124	first strand
Strand 2	B	1144	1149	anti-parallel
Strand 3	B	1232	1237	anti-parallel
Strand 4	B	1173	1179	anti-parallel
Strand 5	B	1182	1189	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1127	1131	first strand
Strand 2	B	1137	1141	anti-parallel
Strand 3	B	1244	1254	anti-parallel
Strand 4	B	1158	1167	anti-parallel
Strand 5	B	1217	1224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1260	1262	first strand
Strand 2	B	1268	1273	anti-parallel
Strand 3	B	1439	1449	anti-parallel
Strand 4	B	1325	1329	anti-parallel
Strand 5	B	1298	1302	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1260	1262	first strand
Strand 2	B	1268	1273	anti-parallel
Strand 3	B	1439	1449	anti-parallel
Strand 4	B	1354	1363	anti-parallel
Strand 5	B	1391	1403	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1285	1287	first strand
Strand 2	B	1337	1342	anti-parallel
Strand 3	B	1410	1416	anti-parallel
Strand 4	B	1369	1375	anti-parallel
Strand 5	B	1386	1387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QEV