Analysis of interatomic Contacts of Structural Units in PDB entry:
6QF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QF4 entry

There is 1 chain in PDB entry 6QF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 18SER 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6QF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
73 87Right-handed alpha
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
126 130Right-handed 310
Helix 5
AA5
A
131 151Right-handed alpha
Helix 6
AA6
A
160 162Right-handed 310
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
203 208Right-handed alpha
Helix 9
AA9
A
214 231Right-handed alpha
Helix 10
AB1
A
239 250Right-handed alpha
Helix 11
AB2
A
255 260Right-handed alpha
Helix 12
AB3
A
263 274Right-handed alpha
Helix 13
AB4
A
277 281Right-handed 310
Helix 14
AB5
A
283 288Right-handed alpha
Helix 15
AB6
A
289 294Right-handed 310
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There are 3 sheets in PDB entry 6QF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 41first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
105 110anti-parallel
Strand 5
A
96 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
71 72anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
164 166anti-parallel
Strand 3
A
175 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il