Analysis of interatomic Contacts of Structural Units in PDB entry:
6QF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QF7 entry

There are 4 chains in PDB entry 6QF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	ALA 369
B	SER 340	SER 593
C	LYS 1	ALA 370
D	SER 339	SER 593

There are 44 helices in PDB entry 6QF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	31	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	52	54	Right-handed 310
Helix 4	AA4	A	66	74	Right-handed alpha
Helix 5	AA5	A	82	87	Right-handed alpha
Helix 6	AA6	A	88	89	Right-handed 310
Helix 7	AA7	A	90	94	Right-handed 310
Helix 8	AA8	A	131	141	Right-handed alpha
Helix 9	AA9	A	153	164	Right-handed alpha
Helix 10	AB1	A	185	201	Right-handed alpha
Helix 11	AB2	A	209	220	Right-handed alpha
Helix 12	AB3	A	228	230	Right-handed 310
Helix 13	AB4	A	231	238	Right-handed alpha
Helix 14	AB5	A	272	283	Right-handed alpha
Helix 15	AB6	A	288	297	Right-handed alpha
Helix 16	AB7	A	304	309	Right-handed alpha
Helix 17	AB8	A	314	327	Right-handed alpha
Helix 18	AB9	A	335	353	Right-handed alpha
Helix 19	AC1	A	356	368	Right-handed alpha
Helix 20	AC2	B	392	397	Right-handed 310
Helix 21	AC3	B	509	514	Right-handed alpha
Helix 22	AC4	B	580	582	Right-handed 310
Helix 23	AC5	B	583	591	Right-handed alpha
Helix 24	AC6	C	16	32	Right-handed alpha
Helix 25	AC7	C	42	51	Right-handed alpha
Helix 26	AC8	C	66	74	Right-handed alpha
Helix 27	AC9	C	90	98	Right-handed alpha
Helix 28	AD1	C	131	140	Right-handed alpha
Helix 29	AD2	C	153	163	Right-handed alpha
Helix 30	AD3	C	185	201	Right-handed alpha
Helix 31	AD4	C	209	219	Right-handed alpha
Helix 32	AD5	C	228	230	Right-handed 310
Helix 33	AD6	C	231	238	Right-handed alpha
Helix 34	AD7	C	272	281	Right-handed alpha
Helix 35	AD8	C	288	297	Right-handed alpha
Helix 36	AD9	C	304	309	Right-handed alpha
Helix 37	AE1	C	316	327	Right-handed alpha
Helix 38	AE2	C	334	352	Right-handed alpha
Helix 39	AE3	C	356	369	Right-handed alpha
Helix 40	AE4	D	392	397	Right-handed 310
Helix 41	AE5	D	451	455	Right-handed 310
Helix 42	AE6	D	509	514	Right-handed alpha
Helix 43	AE7	D	580	582	Right-handed 310
Helix 44	AE8	D	583	591	Right-handed alpha

There are 13 sheets in PDB entry 6QF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	261	266	anti-parallel
Strand 5	A	106	110	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	177	182	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	328	329	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	359	first strand
Strand 2	B	501	508	anti-parallel
Strand 3	B	528	530	anti-parallel
Strand 4	B	573	578	anti-parallel
Strand 5	B	559	570	anti-parallel
Strand 6	B	547	551	anti-parallel
Strand 7	B	480	485	anti-parallel
Strand 8	B	501	508	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	369	373	anti-parallel
Strand 3	B	405	408	anti-parallel
Strand 4	B	423	430	anti-parallel
Strand 5	B	444	448	anti-parallel
Strand 6	B	387	390	anti-parallel
Strand 7	B	382	384	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	262	266	anti-parallel
Strand 5	C	106	107	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	301	302	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	227	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	242	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	175	177	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	328	329	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	359	first strand
Strand 2	D	501	508	anti-parallel
Strand 3	D	528	530	anti-parallel
Strand 4	D	573	578	anti-parallel
Strand 5	D	559	570	anti-parallel
Strand 6	D	547	551	anti-parallel
Strand 7	D	480	485	anti-parallel
Strand 8	D	501	508	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	369	373	anti-parallel
Strand 3	D	405	408	anti-parallel
Strand 4	D	423	430	anti-parallel
Strand 5	D	444	448	anti-parallel
Strand 6	D	387	390	anti-parallel
Strand 7	D	382	384	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QF7