Analysis of interatomic Contacts of Structural Units in PDB entry:
6QFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QFB entry

There are 2 chains in PDB entry 6QFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLU 1097
B	SER 2	LYS 265

There are178 helices in PDB entry 6QFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	39	47	Right-handed alpha
Helix 3	AA3	A	48	52	Right-handed 310
Helix 4	AA4	A	77	86	Right-handed alpha
Helix 5	AA5	A	114	116	Right-handed 310
Helix 6	AA6	A	144	149	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed alpha
Helix 8	AA8	A	174	176	Right-handed 310
Helix 9	AA9	A	177	195	Right-handed alpha
Helix 10	AB1	A	225	234	Right-handed alpha
Helix 11	AB2	A	247	259	Right-handed alpha
Helix 12	AB3	A	281	295	Right-handed alpha
Helix 13	AB4	A	296	301	Right-handed 310
Helix 14	AB5	A	312	328	Right-handed alpha
Helix 15	AB6	A	349	364	Right-handed alpha
Helix 16	AB7	A	364	371	Right-handed alpha
Helix 17	AB8	A	383	399	Right-handed alpha
Helix 18	AB9	A	412	419	Right-handed alpha
Helix 19	AC1	A	505	519	Right-handed alpha
Helix 20	AC2	A	555	563	Right-handed alpha
Helix 21	AC3	A	577	586	Right-handed alpha
Helix 22	AC4	A	602	617	Right-handed alpha
Helix 23	AC5	A	642	649	Right-handed alpha
Helix 24	AC6	A	663	678	Right-handed alpha
Helix 25	AC7	A	696	706	Right-handed alpha
Helix 26	AC8	A	724	733	Right-handed alpha
Helix 27	AC9	A	748	752	Right-handed 310
Helix 28	AD1	A	771	783	Right-handed alpha
Helix 29	AD2	A	789	791	Right-handed 310
Helix 30	AD3	A	792	807	Right-handed alpha
Helix 31	AD4	A	824	831	Right-handed alpha
Helix 32	AD5	A	859	865	Right-handed alpha
Helix 33	AD6	A	867	879	Right-handed alpha
Helix 34	AD7	A	883	897	Right-handed alpha
Helix 35	AD8	A	904	916	Right-handed alpha
Helix 36	AD9	A	919	929	Right-handed alpha
Helix 37	AE1	A	937	952	Right-handed alpha
Helix 38	AE2	A	955	967	Right-handed alpha
Helix 39	AE3	A	984	998	Right-handed alpha
Helix 40	AE4	A	1001	1016	Right-handed alpha
Helix 41	AE5	A	1024	1040	Right-handed alpha
Helix 42	AE6	A	1044	1054	Right-handed alpha
Helix 43	AE7	A	1055	1079	Right-handed alpha
Helix 44	AE8	A	1087	1091	Right-handed 310
Helix 45	AE9	B	7	19	Right-handed alpha
Helix 46	AF1	B	39	47	Right-handed alpha
Helix 47	AF2	B	48	52	Right-handed 310
Helix 48	AF3	B	66	70	Right-handed 310
Helix 49	AF4	B	77	86	Right-handed alpha
Helix 50	AF5	B	114	116	Right-handed 310
Helix 51	AF6	B	144	149	Right-handed alpha
Helix 52	AF7	B	161	169	Right-handed alpha
Helix 53	AF8	B	174	176	Right-handed 310
Helix 54	AF9	B	177	195	Right-handed alpha
Helix 55	AG1	B	225	234	Right-handed alpha
Helix 56	AG2	B	247	259	Right-handed alpha
Helix 57	AG3	B	281	295	Right-handed alpha
Helix 58	AG4	B	296	301	Right-handed 310
Helix 59	AG5	B	312	328	Right-handed alpha
Helix 60	AG6	B	349	364	Right-handed alpha
Helix 61	AG7	B	364	371	Right-handed alpha
Helix 62	AG8	B	383	399	Right-handed alpha
Helix 63	AG9	B	412	419	Right-handed alpha
Helix 64	AH1	B	505	519	Right-handed alpha
Helix 65	AH2	B	555	563	Right-handed alpha
Helix 66	AH3	B	574	586	Right-handed alpha
Helix 67	AH4	B	602	617	Right-handed alpha
Helix 68	AH5	B	642	649	Right-handed alpha
Helix 69	AH6	B	663	678	Right-handed alpha
Helix 70	AH7	B	696	706	Right-handed alpha
Helix 71	AH8	B	724	733	Right-handed alpha
Helix 72	AH9	B	758	763	Right-handed alpha
Helix 73	AI1	B	766	771	Right-handed alpha
Helix 74	AI2	B	771	783	Right-handed alpha
Helix 75	AI3	B	789	791	Right-handed 310
Helix 76	AI4	B	792	807	Right-handed alpha
Helix 77	AI5	B	824	831	Right-handed alpha
Helix 78	AI6	B	859	865	Right-handed alpha
Helix 79	AI7	B	867	879	Right-handed alpha
Helix 80	AI8	B	883	897	Right-handed alpha
Helix 81	AI9	B	904	916	Right-handed alpha
Helix 82	AJ1	B	919	929	Right-handed alpha
Helix 83	AJ2	B	937	952	Right-handed alpha
Helix 84	AJ3	B	955	967	Right-handed alpha
Helix 85	AJ4	B	984	998	Right-handed alpha
Helix 86	AJ5	B	1001	1016	Right-handed alpha
Helix 87	AJ6	B	1024	1040	Right-handed alpha
Helix 88	AJ7	B	1044	1055	Right-handed alpha
Helix 89	AJ8	B	1055	1079	Right-handed alpha
Helix 90	AJ9	B	1087	1091	Right-handed 310
Helix 91	AK1	C	7	19	Right-handed alpha
Helix 92	AK2	C	39	47	Right-handed alpha
Helix 93	AK3	C	48	52	Right-handed 310
Helix 94	AK4	C	66	70	Right-handed 310
Helix 95	AK5	C	77	86	Right-handed alpha
Helix 96	AK6	C	114	116	Right-handed 310
Helix 97	AK7	C	144	149	Right-handed alpha
Helix 98	AK8	C	161	169	Right-handed alpha
Helix 99	AK9	C	174	176	Right-handed 310
Helix 100	AL1	C	177	195	Right-handed alpha
Helix 101	AL2	C	225	234	Right-handed alpha
Helix 102	AL3	C	250	254	Right-handed 310
Helix 103	AL4	C	281	295	Right-handed alpha
Helix 104	AL5	C	312	328	Right-handed alpha
Helix 105	AL6	C	349	364	Right-handed alpha
Helix 106	AL7	C	364	371	Right-handed alpha
Helix 107	AL8	C	383	399	Right-handed alpha
Helix 108	AL9	C	412	418	Right-handed alpha
Helix 109	AM1	C	505	519	Right-handed alpha
Helix 110	AM2	C	555	563	Right-handed alpha
Helix 111	AM3	C	574	586	Right-handed alpha
Helix 112	AM4	C	602	617	Right-handed alpha
Helix 113	AM5	C	642	649	Right-handed alpha
Helix 114	AM6	C	663	678	Right-handed alpha
Helix 115	AM7	C	696	706	Right-handed alpha
Helix 116	AM8	C	723	733	Right-handed alpha
Helix 117	AM9	C	748	752	Right-handed 310
Helix 118	AN1	C	771	783	Right-handed alpha
Helix 119	AN2	C	792	807	Right-handed alpha
Helix 120	AN3	C	825	831	Right-handed alpha
Helix 121	AN4	C	859	865	Right-handed alpha
Helix 122	AN5	C	867	878	Right-handed alpha
Helix 123	AN6	C	883	897	Right-handed alpha
Helix 124	AN7	C	904	916	Right-handed alpha
Helix 125	AN8	C	919	929	Right-handed alpha
Helix 126	AN9	C	937	952	Right-handed alpha
Helix 127	AO1	C	955	967	Right-handed alpha
Helix 128	AO2	C	984	998	Right-handed alpha
Helix 129	AO3	C	1001	1016	Right-handed alpha
Helix 130	AO4	C	1024	1040	Right-handed alpha
Helix 131	AO5	C	1044	1054	Right-handed alpha
Helix 132	AO6	C	1055	1079	Right-handed alpha
Helix 133	AO7	C	1087	1091	Right-handed 310
Helix 134	AO8	D	7	19	Right-handed alpha
Helix 135	AO9	D	39	47	Right-handed alpha
Helix 136	AP1	D	48	52	Right-handed 310
Helix 137	AP2	D	66	70	Right-handed 310
Helix 138	AP3	D	77	86	Right-handed alpha
Helix 139	AP4	D	114	116	Right-handed 310
Helix 140	AP5	D	144	149	Right-handed alpha
Helix 141	AP6	D	161	169	Right-handed alpha
Helix 142	AP7	D	174	176	Right-handed 310
Helix 143	AP8	D	177	195	Right-handed alpha
Helix 144	AP9	D	225	234	Right-handed alpha
Helix 145	AQ1	D	247	259	Right-handed alpha
Helix 146	AQ2	D	281	295	Right-handed alpha
Helix 147	AQ3	D	296	301	Right-handed 310
Helix 148	AQ4	D	312	328	Right-handed alpha
Helix 149	AQ5	D	349	364	Right-handed alpha
Helix 150	AQ6	D	364	371	Right-handed alpha
Helix 151	AQ7	D	383	399	Right-handed alpha
Helix 152	AQ8	D	412	419	Right-handed alpha
Helix 153	AQ9	D	505	519	Right-handed alpha
Helix 154	AR1	D	555	563	Right-handed alpha
Helix 155	AR2	D	574	586	Right-handed alpha
Helix 156	AR3	D	602	617	Right-handed alpha
Helix 157	AR4	D	642	649	Right-handed alpha
Helix 158	AR5	D	663	678	Right-handed alpha
Helix 159	AR6	D	696	706	Right-handed alpha
Helix 160	AR7	D	724	733	Right-handed alpha
Helix 161	AR8	D	748	752	Right-handed 310
Helix 162	AR9	D	771	783	Right-handed alpha
Helix 163	AS1	D	789	791	Right-handed 310
Helix 164	AS2	D	792	807	Right-handed alpha
Helix 165	AS3	D	825	831	Right-handed alpha
Helix 166	AS4	D	859	865	Right-handed alpha
Helix 167	AS5	D	867	878	Right-handed alpha
Helix 168	AS6	D	883	897	Right-handed alpha
Helix 169	AS7	D	904	916	Right-handed alpha
Helix 170	AS8	D	919	929	Right-handed alpha
Helix 171	AS9	D	937	952	Right-handed alpha
Helix 172	AT1	D	955	967	Right-handed alpha
Helix 173	AT2	D	984	998	Right-handed alpha
Helix 174	AT3	D	1001	1016	Right-handed alpha
Helix 175	AT4	D	1024	1040	Right-handed alpha
Helix 176	AT5	D	1044	1054	Right-handed alpha
Helix 177	AT6	D	1055	1079	Right-handed alpha
Helix 178	AT7	D	1087	1091	Right-handed 310

There are 37 sheets in PDB entry 6QFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	197	207	anti-parallel
Strand 4	A	118	126	anti-parallel
Strand 5	A	129	135	anti-parallel
Strand 6	A	150	154	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	197	207	anti-parallel
Strand 4	A	212	214	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	105	109	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	73	76	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	98	101	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	303	308	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	336	340	parallel
Strand 3	A	373	378	parallel
Strand 4	A	402	405	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	543	first strand
Strand 2	A	546	553	anti-parallel
Strand 3	A	526	530	parallel
Strand 4	A	499	502	parallel
Strand 5	A	568	571	parallel
Strand 6	A	593	596	parallel
Strand 7	A	619	621	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	635	first strand
Strand 2	A	628	630	anti-parallel
Strand 3	A	681	686	anti-parallel
Strand 4	A	657	661	parallel
Strand 5	A	712	718	parallel
Strand 6	A	740	745	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	845	846	first strand
Strand 2	A	853	854	anti-parallel
Strand 3	A	857	858	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	218	222	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	118	126	anti-parallel
Strand 5	B	129	135	anti-parallel
Strand 6	B	153	154	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	218	222	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	211	214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	105	109	anti-parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	73	76	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	98	101	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	303	308	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	336	340	parallel
Strand 3	B	373	378	parallel
Strand 4	B	402	405	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	543	first strand
Strand 2	B	546	553	anti-parallel
Strand 3	B	526	530	parallel
Strand 4	B	499	502	parallel
Strand 5	B	568	571	parallel
Strand 6	B	593	596	parallel
Strand 7	B	619	621	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	628	630	anti-parallel
Strand 3	B	681	686	anti-parallel
Strand 4	B	657	661	parallel
Strand 5	B	712	718	parallel
Strand 6	B	740	745	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	845	846	first strand
Strand 2	B	853	854	anti-parallel
Strand 3	B	857	858	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	218	222	anti-parallel
Strand 3	C	197	208	anti-parallel
Strand 4	C	118	126	anti-parallel
Strand 5	C	129	135	anti-parallel
Strand 6	C	153	154	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	218	222	anti-parallel
Strand 3	C	197	208	anti-parallel
Strand 4	C	211	214	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	105	109	anti-parallel
Strand 3	C	55	59	anti-parallel
Strand 4	C	73	76	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	95	first strand
Strand 2	C	98	101	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	336	340	parallel
Strand 3	C	373	378	parallel
Strand 4	C	402	405	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	543	first strand
Strand 2	C	546	553	anti-parallel
Strand 3	C	526	530	parallel
Strand 4	C	499	502	parallel
Strand 5	C	568	571	parallel
Strand 6	C	593	596	parallel
Strand 7	C	619	621	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	635	first strand
Strand 2	C	628	630	anti-parallel
Strand 3	C	681	686	anti-parallel
Strand 4	C	657	661	parallel
Strand 5	C	712	718	parallel
Strand 6	C	740	745	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	824	first strand
Strand 2	D	834	835	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	835	first strand
Strand 2	D	823	824	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	845	846	first strand
Strand 2	C	853	854	anti-parallel
Strand 3	C	857	858	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	218	222	anti-parallel
Strand 3	D	197	207	anti-parallel
Strand 4	D	118	126	anti-parallel
Strand 5	D	129	135	anti-parallel
Strand 6	D	153	154	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	218	222	anti-parallel
Strand 3	D	197	207	anti-parallel
Strand 4	D	212	214	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	105	109	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	73	76	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	98	101	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	303	308	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	336	340	parallel
Strand 3	D	373	378	parallel
Strand 4	D	402	405	parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	543	first strand
Strand 2	D	546	553	anti-parallel
Strand 3	D	526	530	parallel
Strand 4	D	499	502	parallel
Strand 5	D	568	571	parallel
Strand 6	D	593	596	parallel
Strand 7	D	619	621	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	635	first strand
Strand 2	D	628	630	anti-parallel
Strand 3	D	681	686	anti-parallel
Strand 4	D	657	661	parallel
Strand 5	D	712	718	parallel
Strand 6	D	740	745	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	845	846	first strand
Strand 2	D	853	854	anti-parallel
Strand 3	D	857	858	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QFB