Analysis of interatomic Contacts of Structural Units in PDB entry:
6QFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QFS entry

There are 8 chains in PDB entry 6QFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLY 106
B
 ALA 1GLY 106
C
 GLY 3GLY 106
D
 ALA 1GLY 106
E
 GLY 3GLY 106
F
 ALA 2GLY 106
G
 ALA 1GLY 106
H
 ALA 1GLY 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 6QFS

There are 18 sheets in PDB entry 6QFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
5 12anti-parallel
Strand 5
A
101 105parallel
Strand 6
A
96 98anti-parallel
Strand 7
A
35 39anti-parallel
Strand 8
A
60 65anti-parallel
Strand 9
A
52 57anti-parallel
Strand 10
H
4 12parallel
Strand 11
H
16 25anti-parallel
Strand 12
H
77 85anti-parallel
Strand 13
H
45 50anti-parallel
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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
5 12anti-parallel
Strand 5
A
101 105parallel
Strand 6
A
96 98anti-parallel
Strand 7
A
35 39anti-parallel
Strand 8
A
60 65anti-parallel
Strand 9
A
52 57anti-parallel
Strand 10
H
4 12parallel
Strand 11
H
101 105parallel
Strand 12
H
97 98anti-parallel
Strand 13
H
35 39anti-parallel
Strand 14
H
60 65anti-parallel
Strand 15
H
52 57anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
71 72anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
77 85anti-parallel
Strand 3
B
16 25anti-parallel
Strand 4
B
4 12anti-parallel
Strand 5
B
101 105parallel
Strand 6
B
96 98anti-parallel
Strand 7
B
35 39anti-parallel
Strand 8
B
60 65anti-parallel
Strand 9
B
52 57anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
77 85anti-parallel
Strand 3
B
16 25anti-parallel
Strand 4
B
4 12anti-parallel
Strand 5
F
52 57parallel
Strand 6
F
60 65anti-parallel
Strand 7
F
35 39anti-parallel
Strand 8
F
97 98anti-parallel
Strand 9
F
101 102anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
71 72anti-parallel
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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
77 85anti-parallel
Strand 3
C
16 25anti-parallel
Strand 4
C
4 12anti-parallel
Strand 5
C
101 105parallel
Strand 6
C
96 98anti-parallel
Strand 7
C
35 39anti-parallel
Strand 8
C
60 65anti-parallel
Strand 9
C
52 57anti-parallel
Strand 10
G
4 13parallel
Strand 11
G
16 25anti-parallel
Strand 12
G
77 85anti-parallel
Strand 13
G
45 50anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
71 72anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 50first strand
Strand 2
D
77 85anti-parallel
Strand 3
D
16 25anti-parallel
Strand 4
D
4 13anti-parallel
Strand 5
D
104 105parallel
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There are 13 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 50first strand
Strand 2
D
77 85anti-parallel
Strand 3
D
16 25anti-parallel
Strand 4
D
4 13anti-parallel
Strand 5
E
52 57parallel
Strand 6
E
60 65anti-parallel
Strand 7
E
35 39anti-parallel
Strand 8
E
96 98anti-parallel
Strand 9
E
101 105anti-parallel
Strand 10
E
4 12parallel
Strand 11
E
16 25anti-parallel
Strand 12
E
77 85anti-parallel
Strand 13
E
45 50anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
71 72anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 57first strand
Strand 2
D
60 65anti-parallel
Strand 3
D
35 39anti-parallel
Strand 4
D
97 98anti-parallel
Strand 5
D
101 102anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 32first strand
Strand 2
E
71 72anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 50first strand
Strand 2
F
77 85anti-parallel
Strand 3
F
16 25anti-parallel
Strand 4
F
4 12anti-parallel
Strand 5
F
104 105parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 32first strand
Strand 2
F
71 72anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
31 32first strand
Strand 2
G
71 72anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
52 57first strand
Strand 2
G
60 65anti-parallel
Strand 3
G
35 39anti-parallel
Strand 4
G
96 98anti-parallel
Strand 5
G
101 103anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 32first strand
Strand 2
H
71 72anti-parallel
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