Analysis of interatomic Contacts of Structural Units in PDB entry:
6QFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QFY entry

There are 2 chains in PDB entry 6QFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15PRO 302
B
 VAL 15THR 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6QFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 92Right-handed 310
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
289 298Right-handed alpha
Helix 4
AA4
B
89 92Right-handed 310
Helix 5
AA5
B
173 177Right-handed 310
Helix 6
AA6
B
289 296Right-handed alpha
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There are 12 sheets in PDB entry 6QFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
86 87parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
260 274anti-parallel
Strand 4
A
102 108anti-parallel
Strand 5
A
207 215anti-parallel
Strand 6
A
218 224anti-parallel
Strand 7
A
231 237anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
260 274anti-parallel
Strand 3
A
280 285anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
250 251parallel
Strand 3
A
164 171parallel
Strand 4
A
183 185anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
125 128anti-parallel
Strand 4
A
137 147anti-parallel
Strand 5
A
150 160anti-parallel
Strand 6
A
193 197anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
86 87parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
74 77anti-parallel
Strand 3
B
260 274anti-parallel
Strand 4
B
102 108anti-parallel
Strand 5
B
207 215anti-parallel
Strand 6
B
218 224anti-parallel
Strand 7
B
231 237anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 69first strand
Strand 2
B
260 274anti-parallel
Strand 3
B
280 285anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
250 251parallel
Strand 3
B
164 171parallel
Strand 4
B
183 185anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
125 128anti-parallel
Strand 4
B
137 147anti-parallel
Strand 5
B
150 160anti-parallel
Strand 6
B
193 197anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
117 118anti-parallel
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