Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QGB entry

There are 3 chains in PDB entry 6QGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 43	PRO 603
B	VAL 43	PRO 603
C	VAL 43	PHE 287

There are158 helices in PDB entry 6QGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	54	Right-handed alpha
Helix 2	AA2	A	173	184	Right-handed 310
Helix 3	AA3	A	185	194	Right-handed alpha
Helix 4	AA4	A	194	213	Right-handed alpha
Helix 5	AA5	A	225	238	Right-handed alpha
Helix 6	AA6	A	253	255	Right-handed 310
Helix 7	AA7	A	256	269	Right-handed alpha
Helix 8	AA8	A	270	272	Right-handed 310
Helix 9	AA9	A	282	287	Right-handed 310
Helix 10	AB1	A	288	304	Right-handed alpha
Helix 11	AB2	A	305	308	Right-handed 310
Helix 12	AB3	A	316	324	Right-handed alpha
Helix 13	AB4	A	350	363	Right-handed alpha
Helix 14	AB5	A	379	383	Right-handed 310
Helix 15	AB6	A	394	399	Right-handed alpha
Helix 16	AB7	A	414	423	Right-handed alpha
Helix 17	AB8	A	432	434	Right-handed 310
Helix 18	AB9	A	435	442	Right-handed alpha
Helix 19	AC1	A	447	454	Right-handed 310
Helix 20	AC2	A	462	468	Right-handed alpha
Helix 21	AC3	A	474	480	Right-handed alpha
Helix 22	AC4	A	496	511	Right-handed alpha
Helix 23	AC5	A	513	516	Right-handed 310
Helix 24	AC6	A	540	551	Right-handed alpha
Helix 25	AC7	A	563	568	Right-handed 310
Helix 26	AC8	A	593	595	Right-handed 310
Helix 27	AC9	B	47	53	Right-handed alpha
Helix 28	AD1	B	54	56	Right-handed 310
Helix 29	AD2	B	152	156	Right-handed 310
Helix 30	AD3	B	177	184	Right-handed 310
Helix 31	AD4	B	185	194	Right-handed alpha
Helix 32	AD5	B	194	213	Right-handed alpha
Helix 33	AD6	B	225	238	Right-handed alpha
Helix 34	AD7	B	253	255	Right-handed 310
Helix 35	AD8	B	256	269	Right-handed alpha
Helix 36	AD9	B	270	272	Right-handed 310
Helix 37	AE1	B	282	286	Right-handed 310
Helix 38	AE2	B	288	304	Right-handed alpha
Helix 39	AE3	B	305	308	Right-handed 310
Helix 40	AE4	B	316	324	Right-handed alpha
Helix 41	AE5	B	350	363	Right-handed alpha
Helix 42	AE6	B	379	383	Right-handed 310
Helix 43	AE7	B	414	424	Right-handed alpha
Helix 44	AE8	B	432	434	Right-handed 310
Helix 45	AE9	B	435	443	Right-handed alpha
Helix 46	AF1	B	447	453	Right-handed 310
Helix 47	AF2	B	462	468	Right-handed alpha
Helix 48	AF3	B	474	480	Right-handed alpha
Helix 49	AF4	B	496	511	Right-handed alpha
Helix 50	AF5	B	513	516	Right-handed 310
Helix 51	AF6	B	540	551	Right-handed alpha
Helix 52	AF7	B	563	568	Right-handed 310
Helix 53	AF8	B	593	595	Right-handed 310
Helix 54	AF9	C	47	54	Right-handed alpha
Helix 55	AG1	C	177	184	Right-handed 310
Helix 56	AG2	C	185	194	Right-handed alpha
Helix 57	AG3	C	194	213	Right-handed alpha
Helix 58	AG4	C	225	238	Right-handed alpha
Helix 59	AG5	C	253	255	Right-handed 310
Helix 60	AG6	C	256	269	Right-handed alpha
Helix 61	AG7	C	270	272	Right-handed 310
Helix 62	AG8	C	282	286	Right-handed 310
Helix 63	AG9	C	288	304	Right-handed alpha
Helix 64	AH1	C	305	308	Right-handed 310
Helix 65	AH2	C	316	324	Right-handed alpha
Helix 66	AH3	C	350	363	Right-handed alpha
Helix 67	AH4	C	379	383	Right-handed 310
Helix 68	AH5	C	394	399	Right-handed alpha
Helix 69	AH6	C	414	423	Right-handed alpha
Helix 70	AH7	C	432	434	Right-handed 310
Helix 71	AH8	C	435	443	Right-handed alpha
Helix 72	AH9	C	447	453	Right-handed 310
Helix 73	AI1	C	462	468	Right-handed alpha
Helix 74	AI2	C	474	480	Right-handed alpha
Helix 75	AI3	C	496	511	Right-handed alpha
Helix 76	AI4	C	513	516	Right-handed 310
Helix 77	AI5	C	540	551	Right-handed alpha
Helix 78	AI6	C	563	568	Right-handed 310
Helix 79	AI7	C	593	595	Right-handed 310
Helix 80	AI8	D	47	53	Right-handed alpha
Helix 81	AI9	D	152	156	Right-handed 310
Helix 82	AJ1	D	177	184	Right-handed 310
Helix 83	AJ2	D	185	194	Right-handed alpha
Helix 84	AJ3	D	194	213	Right-handed alpha
Helix 85	AJ4	D	225	238	Right-handed alpha
Helix 86	AJ5	D	253	255	Right-handed 310
Helix 87	AJ6	D	256	269	Right-handed alpha
Helix 88	AJ7	D	270	272	Right-handed 310
Helix 89	AJ8	D	282	287	Right-handed 310
Helix 90	AJ9	D	288	304	Right-handed alpha
Helix 91	AK1	D	305	308	Right-handed 310
Helix 92	AK2	D	316	324	Right-handed alpha
Helix 93	AK3	D	350	363	Right-handed alpha
Helix 94	AK4	D	379	383	Right-handed 310
Helix 95	AK5	D	414	423	Right-handed alpha
Helix 96	AK6	D	432	434	Right-handed 310
Helix 97	AK7	D	435	442	Right-handed alpha
Helix 98	AK8	D	447	453	Right-handed 310
Helix 99	AK9	D	462	467	Right-handed alpha
Helix 100	AL1	D	474	480	Right-handed alpha
Helix 101	AL2	D	496	511	Right-handed alpha
Helix 102	AL3	D	513	516	Right-handed 310
Helix 103	AL4	D	540	551	Right-handed alpha
Helix 104	AL5	D	563	567	Right-handed 310
Helix 105	AL6	D	593	595	Right-handed 310
Helix 106	AL7	E	47	53	Right-handed alpha
Helix 107	AL8	E	152	156	Right-handed 310
Helix 108	AL9	E	177	184	Right-handed 310
Helix 109	AM1	E	185	194	Right-handed alpha
Helix 110	AM2	E	194	213	Right-handed alpha
Helix 111	AM3	E	225	238	Right-handed alpha
Helix 112	AM4	E	253	255	Right-handed 310
Helix 113	AM5	E	256	269	Right-handed alpha
Helix 114	AM6	E	270	272	Right-handed 310
Helix 115	AM7	E	282	286	Right-handed 310
Helix 116	AM8	E	288	304	Right-handed alpha
Helix 117	AM9	E	305	308	Right-handed 310
Helix 118	AN1	E	316	324	Right-handed alpha
Helix 119	AN2	E	350	363	Right-handed alpha
Helix 120	AN3	E	379	383	Right-handed 310
Helix 121	AN4	E	414	424	Right-handed alpha
Helix 122	AN5	E	432	434	Right-handed 310
Helix 123	AN6	E	435	443	Right-handed alpha
Helix 124	AN7	E	447	453	Right-handed 310
Helix 125	AN8	E	462	468	Right-handed alpha
Helix 126	AN9	E	474	480	Right-handed alpha
Helix 127	AO1	E	496	511	Right-handed alpha
Helix 128	AO2	E	513	516	Right-handed 310
Helix 129	AO3	E	540	551	Right-handed alpha
Helix 130	AO4	E	563	568	Right-handed 310
Helix 131	AO5	E	593	595	Right-handed 310
Helix 132	AO6	F	47	53	Right-handed alpha
Helix 133	AO7	F	152	156	Right-handed 310
Helix 134	AO8	F	177	184	Right-handed 310
Helix 135	AO9	F	185	194	Right-handed alpha
Helix 136	AP1	F	194	213	Right-handed alpha
Helix 137	AP2	F	225	238	Right-handed alpha
Helix 138	AP3	F	253	255	Right-handed 310
Helix 139	AP4	F	256	269	Right-handed alpha
Helix 140	AP5	F	270	272	Right-handed 310
Helix 141	AP6	F	282	286	Right-handed 310
Helix 142	AP7	F	288	304	Right-handed alpha
Helix 143	AP8	F	305	308	Right-handed 310
Helix 144	AP9	F	316	324	Right-handed alpha
Helix 145	AQ1	F	350	363	Right-handed alpha
Helix 146	AQ2	F	379	383	Right-handed 310
Helix 147	AQ3	F	394	399	Right-handed alpha
Helix 148	AQ4	F	414	423	Right-handed alpha
Helix 149	AQ5	F	432	434	Right-handed 310
Helix 150	AQ6	F	435	443	Right-handed alpha
Helix 151	AQ7	F	447	453	Right-handed 310
Helix 152	AQ8	F	462	467	Right-handed alpha
Helix 153	AQ9	F	474	480	Right-handed alpha
Helix 154	AR1	F	496	511	Right-handed alpha
Helix 155	AR2	F	513	516	Right-handed 310
Helix 156	AR3	F	540	551	Right-handed alpha
Helix 157	AR4	F	563	568	Right-handed 310
Helix 158	AR5	F	593	595	Right-handed 310

There are 24 sheets in PDB entry 6QGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	76	first strand
Strand 2	A	91	102	anti-parallel
Strand 3	A	108	118	anti-parallel
Strand 4	A	158	162	anti-parallel
Strand 5	A	124	128	parallel
Strand 6	A	218	224	parallel
Strand 7	A	244	248	parallel
Strand 8	A	483	489	parallel
Strand 9	A	518	523	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	389	390	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	560	first strand
Strand 2	A	573	576	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	585	first strand
Strand 2	A	597	600	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	76	first strand
Strand 2	B	91	102	anti-parallel
Strand 3	B	108	118	anti-parallel
Strand 4	B	158	162	anti-parallel
Strand 5	B	124	128	parallel
Strand 6	B	218	224	parallel
Strand 7	B	244	248	parallel
Strand 8	B	483	489	parallel
Strand 9	B	518	523	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	389	390	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	560	first strand
Strand 2	B	573	576	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	585	first strand
Strand 2	B	597	600	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	76	first strand
Strand 2	C	91	102	anti-parallel
Strand 3	C	108	118	anti-parallel
Strand 4	C	158	162	anti-parallel
Strand 5	C	124	128	parallel
Strand 6	C	218	224	parallel
Strand 7	C	244	248	parallel
Strand 8	C	483	489	parallel
Strand 9	C	518	523	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	386	first strand
Strand 2	C	389	390	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	560	first strand
Strand 2	C	573	576	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	582	585	first strand
Strand 2	C	597	600	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	76	first strand
Strand 2	D	91	102	anti-parallel
Strand 3	D	108	118	anti-parallel
Strand 4	D	158	162	anti-parallel
Strand 5	D	124	128	parallel
Strand 6	D	218	224	parallel
Strand 7	D	244	248	parallel
Strand 8	D	483	489	parallel
Strand 9	D	518	523	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	389	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	538	first strand
Strand 2	D	557	560	anti-parallel
Strand 3	D	573	576	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	582	585	first strand
Strand 2	D	597	600	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	76	first strand
Strand 2	E	91	102	anti-parallel
Strand 3	E	108	118	anti-parallel
Strand 4	E	158	162	anti-parallel
Strand 5	E	124	128	parallel
Strand 6	E	218	224	parallel
Strand 7	E	244	248	parallel
Strand 8	E	483	489	parallel
Strand 9	E	518	523	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	386	first strand
Strand 2	E	389	390	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	557	560	first strand
Strand 2	E	573	576	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	582	585	first strand
Strand 2	E	597	600	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	76	first strand
Strand 2	F	91	102	anti-parallel
Strand 3	F	108	118	anti-parallel
Strand 4	F	158	162	anti-parallel
Strand 5	F	124	128	parallel
Strand 6	F	218	224	parallel
Strand 7	F	244	248	parallel
Strand 8	F	483	489	parallel
Strand 9	F	518	523	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	386	first strand
Strand 2	F	389	390	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	557	560	first strand
Strand 2	F	573	576	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	582	585	first strand
Strand 2	F	597	600	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGB