Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QGD entry

There is 1 chain in PDB entry 6QGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -196VAL 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6QGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-180 -164Right-handed alpha
Helix 2
AA2
A
-154 -144Right-handed alpha
Helix 3
AA3
A
-130 -123Right-handed alpha
Helix 4
AA4
A
-114 -109Right-handed alpha
Helix 5
AA5
A
-106 -99Right-handed alpha
Helix 6
AA6
A
-68 -66Right-handed 310
Helix 7
AA7
A
-65 -55Right-handed alpha
Helix 8
AA8
A
-43 -40Right-handed 310
Helix 9
AA9
A
-39 -32Right-handed alpha
Helix 10
AB1
A
-11 5Right-handed alpha
Helix 11
AB2
A
13 23Right-handed alpha
Helix 12
AB3
A
32 34Right-handed 310
Helix 13
AB4
A
35 43Right-handed alpha
Helix 14
AB5
A
76 87Right-handed alpha
Helix 15
AB6
A
90 101Right-handed alpha
Helix 16
AB7
A
108 116Right-handed alpha
Helix 17
AB8
A
118 131Right-handed alpha
Helix 18
AB9
A
139 156Right-handed alpha
Helix 19
AC1
A
160 192Right-handed alpha
Helix 20
AC2
A
204 224Right-handed alpha
Helix 21
AC3
A
224 236Right-handed alpha
Helix 22
AC4
A
239 256Right-handed alpha
Helix 23
AC5
A
260 281Right-handed alpha
Helix 24
AC6
A
283 285Right-handed 310
Helix 25
AC7
A
286 309Right-handed alpha
Helix 26
AC8
A
310 319Right-handed alpha
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There are 5 sheets in PDB entry 6QGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-161 -158first strand
Strand 2
A
-189 -186parallel
Strand 3
A
-137 -133parallel
Strand 4
A
62 70anti-parallel
Strand 5
A
-90 -85anti-parallel
Strand 6
A
105 106anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-161 -158first strand
Strand 2
A
-189 -186parallel
Strand 3
A
-137 -133parallel
Strand 4
A
62 70anti-parallel
Strand 5
A
132 133parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-98 -97first strand
Strand 2
A
-94 -93anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-51 -49first strand
Strand 2
A
26 31parallel
Strand 3
A
-82 -78anti-parallel
Strand 4
A
46 49anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-29 -26first strand
Strand 2
A
-19 -14anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il