Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QGL entry

There are 2 chains in PDB entry 6QGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8GLU 498
B
 GLU 39GLU 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6QGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
42 65Right-handed alpha
Helix 3
AA3
A
68 71Right-handed 310
Helix 4
AA4
A
72 93Right-handed alpha
Helix 5
AA5
A
96 141Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
228 258Right-handed alpha
Helix 8
AA8
A
273 284Right-handed alpha
Helix 9
AA9
A
288 297Right-handed alpha
Helix 10
AB1
A
326 330Right-handed 310
Helix 11
AB2
A
399 401Right-handed 310
Helix 12
AB3
A
479 497Right-handed alpha
Helix 13
AB4
B
42 67Right-handed alpha
Helix 14
AB5
B
67 93Right-handed alpha
Helix 15
AB6
B
96 140Right-handed alpha
Helix 16
AB7
B
144 149Right-handed alpha
Helix 17
AB8
B
228 258Right-handed alpha
Helix 18
AB9
B
490 494Right-handed alpha
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There are 8 sheets in PDB entry 6QGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 174first strand
Strand 2
A
180 189anti-parallel
Strand 3
A
201 204anti-parallel
Strand 4
A
209 213anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
224 226anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
447 454anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
317 324anti-parallel
Strand 5
A
347 352anti-parallel
Strand 6
A
438 443anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
422 431anti-parallel
Strand 3
A
366 367anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
422 431anti-parallel
Strand 3
A
382 388anti-parallel
Strand 4
A
393 397anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
402 403anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 174first strand
Strand 2
B
180 189anti-parallel
Strand 3
B
201 204anti-parallel
Strand 4
B
209 213anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
224 226anti-parallel
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