Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QGM entry

There are 3 chains in PDB entry 6QGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	VAL 5	SER 532
b	VAL 5	ALA 533
c	VAL 5	VAL 189

There are162 helices in PDB entry 6QGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	15	30	Right-handed alpha
Helix 2	AA2	a	54	63	Right-handed alpha
Helix 3	AA3	a	66	71	Right-handed alpha
Helix 4	AA4	a	72	75	Right-handed 310
Helix 5	AA5	a	112	114	Right-handed 310
Helix 6	AA6	a	115	124	Right-handed alpha
Helix 7	AA7	a	125	128	Right-handed 310
Helix 8	AA8	a	129	130	Right-handed 310
Helix 9	AA9	a	131	138	Right-handed alpha
Helix 10	AB1	a	139	147	Right-handed alpha
Helix 11	AB2	a	161	166	Right-handed alpha
Helix 12	AB3	a	172	183	Right-handed alpha
Helix 13	AB4	a	229	233	Right-handed 310
Helix 14	AB5	a	265	270	Right-handed alpha
Helix 15	AB6	a	305	318	Right-handed alpha
Helix 16	AB7	a	319	322	Right-handed 310
Helix 17	AB8	a	355	359	Right-handed 310
Helix 18	AB9	a	362	377	Right-handed alpha
Helix 19	AC1	a	384	412	Right-handed alpha
Helix 20	AC2	a	418	427	Right-handed alpha
Helix 21	AC3	a	431	436	Right-handed 310
Helix 22	AC4	a	443	453	Right-handed alpha
Helix 23	AC5	a	459	463	Right-handed 310
Helix 24	AC6	a	464	472	Right-handed alpha
Helix 25	AC7	a	479	488	Right-handed alpha
Helix 26	AC8	a	496	516	Right-handed alpha
Helix 27	AC9	a	520	529	Right-handed alpha
Helix 28	AD1	b	16	30	Right-handed alpha
Helix 29	AD2	b	54	63	Right-handed alpha
Helix 30	AD3	b	66	71	Right-handed alpha
Helix 31	AD4	b	72	75	Right-handed 310
Helix 32	AD5	b	112	114	Right-handed 310
Helix 33	AD6	b	115	124	Right-handed alpha
Helix 34	AD7	b	125	128	Right-handed 310
Helix 35	AD8	b	129	130	Right-handed 310
Helix 36	AD9	b	131	138	Right-handed alpha
Helix 37	AE1	b	139	147	Right-handed alpha
Helix 38	AE2	b	161	166	Right-handed alpha
Helix 39	AE3	b	172	183	Right-handed alpha
Helix 40	AE4	b	229	233	Right-handed 310
Helix 41	AE5	b	265	270	Right-handed alpha
Helix 42	AE6	b	305	318	Right-handed alpha
Helix 43	AE7	b	319	322	Right-handed 310
Helix 44	AE8	b	355	359	Right-handed 310
Helix 45	AE9	b	362	377	Right-handed alpha
Helix 46	AF1	b	384	412	Right-handed alpha
Helix 47	AF2	b	418	427	Right-handed alpha
Helix 48	AF3	b	431	436	Right-handed 310
Helix 49	AF4	b	443	453	Right-handed alpha
Helix 50	AF5	b	459	463	Right-handed 310
Helix 51	AF6	b	464	472	Right-handed alpha
Helix 52	AF7	b	479	488	Right-handed alpha
Helix 53	AF8	b	496	516	Right-handed alpha
Helix 54	AF9	b	520	529	Right-handed alpha
Helix 55	AG1	c	16	30	Right-handed alpha
Helix 56	AG2	c	54	63	Right-handed alpha
Helix 57	AG3	c	66	71	Right-handed alpha
Helix 58	AG4	c	72	75	Right-handed 310
Helix 59	AG5	c	112	114	Right-handed 310
Helix 60	AG6	c	115	124	Right-handed alpha
Helix 61	AG7	c	125	128	Right-handed 310
Helix 62	AG8	c	129	130	Right-handed 310
Helix 63	AG9	c	131	138	Right-handed alpha
Helix 64	AH1	c	139	147	Right-handed alpha
Helix 65	AH2	c	161	166	Right-handed alpha
Helix 66	AH3	c	171	183	Right-handed alpha
Helix 67	AH4	c	229	233	Right-handed 310
Helix 68	AH5	c	265	270	Right-handed alpha
Helix 69	AH6	c	305	318	Right-handed alpha
Helix 70	AH7	c	319	322	Right-handed 310
Helix 71	AH8	c	355	359	Right-handed 310
Helix 72	AH9	c	362	377	Right-handed alpha
Helix 73	AI1	c	384	412	Right-handed alpha
Helix 74	AI2	c	418	427	Right-handed alpha
Helix 75	AI3	c	431	436	Right-handed 310
Helix 76	AI4	c	443	453	Right-handed alpha
Helix 77	AI5	c	459	463	Right-handed 310
Helix 78	AI6	c	464	472	Right-handed alpha
Helix 79	AI7	c	479	488	Right-handed alpha
Helix 80	AI8	c	496	516	Right-handed alpha
Helix 81	AI9	c	520	529	Right-handed alpha
Helix 82	AJ1	d	16	30	Right-handed alpha
Helix 83	AJ2	d	54	63	Right-handed alpha
Helix 84	AJ3	d	66	71	Right-handed alpha
Helix 85	AJ4	d	72	75	Right-handed 310
Helix 86	AJ5	d	112	114	Right-handed 310
Helix 87	AJ6	d	115	124	Right-handed alpha
Helix 88	AJ7	d	125	128	Right-handed 310
Helix 89	AJ8	d	129	130	Right-handed 310
Helix 90	AJ9	d	131	138	Right-handed alpha
Helix 91	AK1	d	139	147	Right-handed alpha
Helix 92	AK2	d	161	166	Right-handed alpha
Helix 93	AK3	d	172	183	Right-handed alpha
Helix 94	AK4	d	229	233	Right-handed 310
Helix 95	AK5	d	265	270	Right-handed alpha
Helix 96	AK6	d	305	318	Right-handed alpha
Helix 97	AK7	d	319	322	Right-handed 310
Helix 98	AK8	d	355	359	Right-handed 310
Helix 99	AK9	d	362	377	Right-handed alpha
Helix 100	AL1	d	384	412	Right-handed alpha
Helix 101	AL2	d	418	427	Right-handed alpha
Helix 102	AL3	d	431	436	Right-handed 310
Helix 103	AL4	d	443	453	Right-handed alpha
Helix 104	AL5	d	459	463	Right-handed 310
Helix 105	AL6	d	464	472	Right-handed alpha
Helix 106	AL7	d	479	488	Right-handed alpha
Helix 107	AL8	d	496	516	Right-handed alpha
Helix 108	AL9	d	520	529	Right-handed alpha
Helix 109	AM1	e	16	30	Right-handed alpha
Helix 110	AM2	e	54	63	Right-handed alpha
Helix 111	AM3	e	66	71	Right-handed alpha
Helix 112	AM4	e	72	75	Right-handed 310
Helix 113	AM5	e	112	114	Right-handed 310
Helix 114	AM6	e	115	124	Right-handed alpha
Helix 115	AM7	e	125	128	Right-handed 310
Helix 116	AM8	e	129	130	Right-handed 310
Helix 117	AM9	e	131	138	Right-handed alpha
Helix 118	AN1	e	139	147	Right-handed alpha
Helix 119	AN2	e	161	166	Right-handed alpha
Helix 120	AN3	e	172	183	Right-handed alpha
Helix 121	AN4	e	229	233	Right-handed 310
Helix 122	AN5	e	265	270	Right-handed alpha
Helix 123	AN6	e	305	318	Right-handed alpha
Helix 124	AN7	e	319	322	Right-handed 310
Helix 125	AN8	e	355	359	Right-handed 310
Helix 126	AN9	e	362	377	Right-handed alpha
Helix 127	AO1	e	384	412	Right-handed alpha
Helix 128	AO2	e	418	427	Right-handed alpha
Helix 129	AO3	e	431	436	Right-handed 310
Helix 130	AO4	e	443	453	Right-handed alpha
Helix 131	AO5	e	459	463	Right-handed 310
Helix 132	AO6	e	464	472	Right-handed alpha
Helix 133	AO7	e	479	488	Right-handed alpha
Helix 134	AO8	e	496	516	Right-handed alpha
Helix 135	AO9	e	520	529	Right-handed alpha
Helix 136	AP1	f	16	30	Right-handed alpha
Helix 137	AP2	f	54	63	Right-handed alpha
Helix 138	AP3	f	66	71	Right-handed alpha
Helix 139	AP4	f	72	75	Right-handed 310
Helix 140	AP5	f	112	114	Right-handed 310
Helix 141	AP6	f	115	124	Right-handed alpha
Helix 142	AP7	f	125	128	Right-handed 310
Helix 143	AP8	f	129	130	Right-handed 310
Helix 144	AP9	f	131	138	Right-handed alpha
Helix 145	AQ1	f	139	147	Right-handed alpha
Helix 146	AQ2	f	161	166	Right-handed alpha
Helix 147	AQ3	f	172	183	Right-handed alpha
Helix 148	AQ4	f	229	233	Right-handed 310
Helix 149	AQ5	f	265	270	Right-handed alpha
Helix 150	AQ6	f	305	318	Right-handed alpha
Helix 151	AQ7	f	319	322	Right-handed 310
Helix 152	AQ8	f	355	359	Right-handed 310
Helix 153	AQ9	f	362	377	Right-handed alpha
Helix 154	AR1	f	384	412	Right-handed alpha
Helix 155	AR2	f	418	427	Right-handed alpha
Helix 156	AR3	f	431	436	Right-handed 310
Helix 157	AR4	f	443	453	Right-handed alpha
Helix 158	AR5	f	459	463	Right-handed 310
Helix 159	AR6	f	464	472	Right-handed alpha
Helix 160	AR7	f	479	488	Right-handed alpha
Helix 161	AR8	f	496	516	Right-handed alpha
Helix 162	AR9	f	520	529	Right-handed alpha

There are 30 sheets in PDB entry 6QGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	190	193	first strand
Strand 2	a	34	39	parallel
Strand 3	a	9	13	parallel
Strand 4	a	224	227	parallel
Strand 5	a	344	346	parallel
Strand 6	a	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	49	51	first strand
Strand 2	a	167	171	anti-parallel
Strand 3	a	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	94	98	first strand
Strand 2	a	81	85	anti-parallel
Strand 3	a	273	278	parallel
Strand 4	a	282	288	anti-parallel
Strand 5	a	293	299	anti-parallel
Strand 6	a	255	261	anti-parallel
Strand 7	a	326	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	196	201	first strand
Strand 2	a	209	214	anti-parallel
Strand 3	a	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	244	246	first strand
Strand 2	a	334	336	anti-parallel
Strand 3	a	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	190	193	first strand
Strand 2	b	34	39	parallel
Strand 3	b	9	13	parallel
Strand 4	b	224	227	parallel
Strand 5	b	344	346	parallel
Strand 6	b	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	49	51	first strand
Strand 2	b	167	171	anti-parallel
Strand 3	b	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	94	98	first strand
Strand 2	b	81	85	anti-parallel
Strand 3	b	273	278	parallel
Strand 4	b	282	288	anti-parallel
Strand 5	b	293	299	anti-parallel
Strand 6	b	255	261	anti-parallel
Strand 7	b	327	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	196	201	first strand
Strand 2	b	209	214	anti-parallel
Strand 3	b	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	244	246	first strand
Strand 2	b	334	336	anti-parallel
Strand 3	b	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	190	193	first strand
Strand 2	c	34	39	parallel
Strand 3	c	9	13	parallel
Strand 4	c	224	227	parallel
Strand 5	c	344	346	parallel
Strand 6	c	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	50	51	first strand
Strand 2	c	167	170	anti-parallel
Strand 3	c	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	94	98	first strand
Strand 2	c	81	85	anti-parallel
Strand 3	c	273	278	parallel
Strand 4	c	282	288	anti-parallel
Strand 5	c	293	299	anti-parallel
Strand 6	c	255	261	anti-parallel
Strand 7	c	326	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	196	201	first strand
Strand 2	c	209	214	anti-parallel
Strand 3	c	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	244	246	first strand
Strand 2	c	334	336	anti-parallel
Strand 3	c	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	190	193	first strand
Strand 2	d	34	39	parallel
Strand 3	d	9	13	parallel
Strand 4	d	224	227	parallel
Strand 5	d	344	346	parallel
Strand 6	d	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	49	51	first strand
Strand 2	d	167	171	anti-parallel
Strand 3	d	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	94	98	first strand
Strand 2	d	81	85	anti-parallel
Strand 3	d	273	278	parallel
Strand 4	d	282	288	anti-parallel
Strand 5	d	293	299	anti-parallel
Strand 6	d	255	261	anti-parallel
Strand 7	d	326	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	196	201	first strand
Strand 2	d	209	214	anti-parallel
Strand 3	d	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	244	246	first strand
Strand 2	d	334	336	anti-parallel
Strand 3	d	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	190	193	first strand
Strand 2	e	34	39	parallel
Strand 3	e	9	13	parallel
Strand 4	e	224	227	parallel
Strand 5	e	344	346	parallel
Strand 6	e	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	49	51	first strand
Strand 2	e	167	171	anti-parallel
Strand 3	e	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	94	98	first strand
Strand 2	e	81	85	anti-parallel
Strand 3	e	273	278	parallel
Strand 4	e	282	288	anti-parallel
Strand 5	e	293	299	anti-parallel
Strand 6	e	255	261	anti-parallel
Strand 7	e	326	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	196	201	first strand
Strand 2	e	209	214	anti-parallel
Strand 3	e	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	244	246	first strand
Strand 2	e	334	336	anti-parallel
Strand 3	e	352	353	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	190	193	first strand
Strand 2	f	34	39	parallel
Strand 3	f	9	13	parallel
Strand 4	f	224	227	parallel
Strand 5	f	344	346	parallel
Strand 6	f	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	49	51	first strand
Strand 2	f	167	171	anti-parallel
Strand 3	f	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	94	98	first strand
Strand 2	f	81	85	anti-parallel
Strand 3	f	273	278	parallel
Strand 4	f	282	288	anti-parallel
Strand 5	f	293	299	anti-parallel
Strand 6	f	255	261	anti-parallel
Strand 7	f	326	330	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	196	201	first strand
Strand 2	f	209	214	anti-parallel
Strand 3	f	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	244	246	first strand
Strand 2	f	334	336	anti-parallel
Strand 3	f	352	353	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGM