Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QGO entry

There are 2 chains in PDB entry 6QGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 9ILE 229
C
 SER 7ILE 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6QGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
34 43Right-handed alpha
Helix 2
AA2
B
62 65Right-handed 310
Helix 3
AA3
B
85 107Right-handed alpha
Helix 4
AA4
B
109 111Right-handed 310
Helix 5
AA5
B
119 130Right-handed alpha
Helix 6
AA6
B
148 152Right-handed 310
Helix 7
AA7
B
178 193Right-handed alpha
Helix 8
AA8
B
194 196Right-handed 310
Helix 9
AA9
B
211 226Right-handed alpha
Helix 10
AB1
C
34 43Right-handed alpha
Helix 11
AB2
C
62 65Right-handed 310
Helix 12
AB3
C
85 106Right-handed alpha
Helix 13
AB4
C
109 111Right-handed 310
Helix 14
AB5
C
119 132Right-handed alpha
Helix 15
AB6
C
148 152Right-handed 310
Helix 16
AB7
C
178 193Right-handed alpha
Helix 17
AB8
C
194 196Right-handed 310
Helix 18
AB9
C
211 226Right-handed alpha
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There are 4 sheets in PDB entry 6QGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
22 27parallel
Strand 4
B
113 118parallel
Strand 5
B
138 142parallel
Strand 6
B
166 171parallel
Strand 7
B
198 203parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
68 70anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
49 53anti-parallel
Strand 3
C
22 27parallel
Strand 4
C
113 118parallel
Strand 5
C
138 142parallel
Strand 6
C
166 171parallel
Strand 7
C
198 203parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
68 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il