Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QGS entry

There are 6 chains in PDB entry 6QGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 5	ILE 229
D	PRO 9	ILE 229
A	PRO 9	ILE 229
C	PRO 9	ILE 229
E	PRO 9	ILE 229
F	PRO 9	ILE 229

There are 51 helices in PDB entry 6QGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	34	43	Right-handed alpha
Helix 2	AA2	B	62	65	Right-handed 310
Helix 3	AA3	B	85	105	Right-handed alpha
Helix 4	AA4	B	109	111	Right-handed 310
Helix 5	AA5	B	119	130	Right-handed alpha
Helix 6	AA6	B	148	152	Right-handed 310
Helix 7	AA7	B	178	193	Right-handed alpha
Helix 8	AA8	B	194	196	Right-handed 310
Helix 9	AA9	B	211	226	Right-handed alpha
Helix 10	AB1	D	33	44	Right-handed alpha
Helix 11	AB2	D	62	65	Right-handed 310
Helix 12	AB3	D	85	106	Right-handed alpha
Helix 13	AB4	D	109	111	Right-handed 310
Helix 14	AB5	D	119	132	Right-handed alpha
Helix 15	AB6	D	148	152	Right-handed 310
Helix 16	AB7	D	159	164	Right-handed 310
Helix 17	AB8	D	178	193	Right-handed alpha
Helix 18	AB9	D	194	196	Right-handed 310
Helix 19	AC1	D	211	226	Right-handed alpha
Helix 20	AC2	A	33	43	Right-handed alpha
Helix 21	AC3	A	85	107	Right-handed alpha
Helix 22	AC4	A	109	111	Right-handed 310
Helix 23	AC5	A	119	132	Right-handed alpha
Helix 24	AC6	A	148	152	Right-handed 310
Helix 25	AC7	A	178	193	Right-handed alpha
Helix 26	AC8	A	194	196	Right-handed 310
Helix 27	AC9	A	211	226	Right-handed alpha
Helix 28	AD1	C	34	43	Right-handed alpha
Helix 29	AD2	C	85	106	Right-handed alpha
Helix 30	AD3	C	109	111	Right-handed 310
Helix 31	AD4	C	119	130	Right-handed alpha
Helix 32	AD5	C	148	152	Right-handed 310
Helix 33	AD6	C	178	193	Right-handed alpha
Helix 34	AD7	C	194	196	Right-handed 310
Helix 35	AD8	C	211	226	Right-handed alpha
Helix 36	AD9	E	34	43	Right-handed alpha
Helix 37	AE1	E	85	106	Right-handed alpha
Helix 38	AE2	E	109	111	Right-handed 310
Helix 39	AE3	E	119	132	Right-handed alpha
Helix 40	AE4	E	148	152	Right-handed 310
Helix 41	AE5	E	178	191	Right-handed alpha
Helix 42	AE6	E	194	196	Right-handed 310
Helix 43	AE7	E	211	226	Right-handed alpha
Helix 44	AE8	F	33	43	Right-handed alpha
Helix 45	AE9	F	85	105	Right-handed alpha
Helix 46	AF1	F	109	111	Right-handed 310
Helix 47	AF2	F	119	132	Right-handed alpha
Helix 48	AF3	F	148	152	Right-handed 310
Helix 49	AF4	F	178	193	Right-handed alpha
Helix 50	AF5	F	194	196	Right-handed 310
Helix 51	AF6	F	211	226	Right-handed alpha

There are 12 sheets in PDB entry 6QGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	22	27	parallel
Strand 4	B	113	118	parallel
Strand 5	B	138	142	parallel
Strand 6	B	165	171	parallel
Strand 7	B	198	203	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	68	70	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	22	27	parallel
Strand 3	D	113	118	parallel
Strand 4	D	138	142	parallel
Strand 5	D	165	171	parallel
Strand 6	D	198	203	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	68	70	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	22	27	parallel
Strand 4	A	113	118	parallel
Strand 5	A	138	142	parallel
Strand 6	A	165	171	parallel
Strand 7	A	198	203	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	68	70	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	49	53	anti-parallel
Strand 3	C	22	27	parallel
Strand 4	C	113	118	parallel
Strand 5	C	138	142	parallel
Strand 6	C	165	171	parallel
Strand 7	C	198	203	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	67	70	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	49	53	anti-parallel
Strand 3	E	22	27	parallel
Strand 4	E	113	118	parallel
Strand 5	E	138	142	parallel
Strand 6	E	165	171	parallel
Strand 7	E	198	203	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	68	70	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	49	53	anti-parallel
Strand 3	F	22	27	parallel
Strand 4	F	113	118	parallel
Strand 5	F	138	142	parallel
Strand 6	F	165	171	parallel
Strand 7	F	198	203	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	68	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGS