Analysis of interatomic Contacts of Structural Units in PDB entry:
6QGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QGW entry

There are 2 chains in PDB entry 6QGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 426GLY 807
B
 GLN 2ALA 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6QGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
448 452Right-handed 310
Helix 2
AA2
A
497 500Right-handed 310
Helix 3
AA3
A
542 552Right-handed alpha
Helix 4
AA4
A
647 651Right-handed 310
Helix 5
AA5
A
729 731Right-handed 310
Helix 6
AA6
A
750 754Right-handed 310
Helix 7
AA7
B
29 33Right-handed 310
Helix 8
AA8
B
63 66Right-handed 310
Helix 9
AA9
B
88 92Right-handed 310
Helix 10
AB1
B
104 108Right-handed 310
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There are 5 sheets in PDB entry 6QGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
117 122parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
47 52anti-parallel
Strand 6
B
58 61anti-parallel
Strand 7
A
564 579anti-parallel
Strand 8
B
112 113first strand
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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
117 122parallel
Strand 3
B
93 100anti-parallel
Strand 4
A
590 600first strand
Strand 5
A
608 620anti-parallel
Strand 6
A
628 640anti-parallel
Strand 7
A
710 720anti-parallel
Strand 8
A
733 745anti-parallel
Strand 9
A
767 778anti-parallel
Strand 10
A
781 792anti-parallel
Strand 11
A
802 806anti-parallel
Strand 12
A
427 433anti-parallel
Strand 13
A
437 446anti-parallel
Strand 14
A
455 462anti-parallel
Strand 15
A
466 475anti-parallel
Strand 16
A
484 495anti-parallel
Strand 17
A
505 520anti-parallel
Strand 18
A
523 537anti-parallel
Strand 19
A
564 579anti-parallel
Strand 20
B
112 113first strand
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 663first strand
Strand 2
A
799 800anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 674first strand
Strand 2
A
700 705anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il