Analysis of interatomic Contacts of Structural Units in PDB entry:
6QH7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QH7 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6QH7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	GLY 621
B	PRO 81	VAL 582
M	TRP 161	CYS 446
N	MET 1	GLN 143
P	ASP 1	ASN 6
Q	MET 2	MET 2
Q	GLN 4	SER 10
S	MET 1	GLU 142

There are 82 helices in PDB entry 6QH7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	25	45	Right-handed alpha
Helix 3	AA3	A	51	69	Right-handed alpha
Helix 4	AA4	A	75	83	Right-handed alpha
Helix 5	AA5	A	87	101	Right-handed alpha
Helix 6	AA6	A	105	122	Right-handed alpha
Helix 7	AA7	A	124	139	Right-handed alpha
Helix 8	AA8	A	140	148	Right-handed alpha
Helix 9	AA9	A	149	156	Right-handed alpha
Helix 10	AB1	A	161	179	Right-handed alpha
Helix 11	AB2	A	180	183	Right-handed 310
Helix 12	AB3	A	188	195	Right-handed alpha
Helix 13	AB4	A	196	198	Right-handed 310
Helix 14	AB5	A	200	216	Right-handed alpha
Helix 15	AB6	A	224	239	Right-handed alpha
Helix 16	AB7	A	244	248	Right-handed 310
Helix 17	AB8	A	254	267	Right-handed alpha
Helix 18	AB9	A	273	293	Right-handed alpha
Helix 19	AC1	A	299	321	Right-handed alpha
Helix 20	AC2	A	323	338	Right-handed alpha
Helix 21	AC3	A	342	357	Right-handed alpha
Helix 22	AC4	A	359	369	Right-handed alpha
Helix 23	AC5	A	369	380	Right-handed alpha
Helix 24	AC6	A	383	397	Right-handed alpha
Helix 25	AC7	A	398	416	Right-handed alpha
Helix 26	AC8	A	420	435	Right-handed alpha
Helix 27	AC9	A	438	453	Right-handed alpha
Helix 28	AD1	A	458	473	Right-handed alpha
Helix 29	AD2	A	474	488	Right-handed alpha
Helix 30	AD3	A	493	508	Right-handed alpha
Helix 31	AD4	A	509	512	Right-handed 310
Helix 32	AD5	A	514	517	Right-handed 310
Helix 33	AD6	A	518	529	Right-handed alpha
Helix 34	AD7	A	534	552	Right-handed alpha
Helix 35	AD8	A	555	565	Right-handed alpha
Helix 36	AD9	A	565	570	Right-handed alpha
Helix 37	AE1	A	573	589	Right-handed alpha
Helix 38	AE2	A	591	599	Right-handed alpha
Helix 39	AE3	A	610	619	Right-handed alpha
Helix 40	AE4	B	84	87	Right-handed 310
Helix 41	AE5	B	88	94	Right-handed alpha
Helix 42	AE6	B	100	102	Right-handed 310
Helix 43	AE7	B	103	111	Right-handed alpha
Helix 44	AE8	B	118	130	Right-handed alpha
Helix 45	AE9	B	134	149	Right-handed alpha
Helix 46	AF1	B	155	167	Right-handed alpha
Helix 47	AF2	B	173	188	Right-handed alpha
Helix 48	AF3	B	200	214	Right-handed alpha
Helix 49	AF4	B	215	227	Right-handed alpha
Helix 50	AF5	B	233	245	Right-handed alpha
Helix 51	AF6	B	253	266	Right-handed alpha
Helix 52	AF7	B	276	290	Right-handed alpha
Helix 53	AF8	B	291	294	Right-handed 310
Helix 54	AF9	B	295	313	Right-handed alpha
Helix 55	AG1	B	319	324	Right-handed 310
Helix 56	AG2	B	331	346	Right-handed alpha
Helix 57	AG3	B	350	362	Right-handed alpha
Helix 58	AG4	B	366	384	Right-handed alpha
Helix 59	AG5	B	386	400	Right-handed alpha
Helix 60	AG6	B	403	421	Right-handed alpha
Helix 61	AG7	B	425	427	Right-handed 310
Helix 62	AG8	B	428	435	Right-handed alpha
Helix 63	AG9	B	436	439	Right-handed 310
Helix 64	AH1	B	441	455	Right-handed alpha
Helix 65	AH2	B	461	471	Right-handed alpha
Helix 66	AH3	B	477	495	Right-handed alpha
Helix 67	AH4	B	496	498	Right-handed 310
Helix 68	AH5	B	499	512	Right-handed alpha
Helix 69	AH6	B	516	533	Right-handed alpha
Helix 70	AH7	B	533	542	Right-handed alpha
Helix 71	AH8	B	556	566	Right-handed alpha
Helix 72	AH9	B	569	575	Right-handed alpha
Helix 73	AI1	B	577	581	Right-handed 310
Helix 74	AI2	N	27	36	Right-handed alpha
Helix 75	AI3	N	74	94	Right-handed alpha
Helix 76	AI4	N	97	104	Right-handed alpha
Helix 77	AI5	N	104	115	Right-handed alpha
Helix 78	AI6	S	24	41	Right-handed alpha
Helix 79	AI7	S	76	96	Right-handed alpha
Helix 80	AI8	S	99	106	Right-handed alpha
Helix 81	AI9	S	106	117	Right-handed alpha
Helix 82	AJ1	S	127	137	Right-handed alpha

There are 9 sheets in PDB entry 6QH7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	256	259	first strand
Strand 2	M	281	290	anti-parallel
Strand 3	M	191	205	anti-parallel
Strand 4	M	172	185	anti-parallel
Strand 5	M	430	438	parallel
Strand 6	P	3	4	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	274	276	first strand
Strand 2	M	211	216	anti-parallel
Strand 3	M	412	418	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	298	301	first strand
Strand 2	M	311	320	anti-parallel
Strand 3	M	304	307	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	298	301	first strand
Strand 2	M	311	320	anti-parallel
Strand 3	M	374	382	anti-parallel
Strand 4	M	343	348	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	352	356	first strand
Strand 2	M	361	370	anti-parallel
Strand 3	M	327	336	anti-parallel
Strand 4	M	398	402	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	14	18	first strand
Strand 2	N	5	8	anti-parallel
Strand 3	N	63	69	anti-parallel
Strand 4	N	53	60	anti-parallel
Strand 5	N	48	50	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	116	117	first strand
Strand 2	N	120	121	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	19	first strand
Strand 2	S	2	9	anti-parallel
Strand 3	S	65	71	anti-parallel
Strand 4	S	55	62	anti-parallel
Strand 5	S	49	52	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QH7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QH7