Analysis of interatomic Contacts of Structural Units in PDB entry:
6QI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QI8 entry

There are 6 chains in PDB entry 6QI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LYS 456
B	LYS 2	ASP 452
C	LYS 2	ASP 452
D	GLY 23	ASN 453
E	THR 8	ASN 453
F	THR 8	ASN 453

There are 94 helices in PDB entry 6QI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	58	Right-handed alpha
Helix 2	AA2	A	75	86	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	107	117	Right-handed alpha
Helix 5	AA5	A	239	244	Right-handed alpha
Helix 6	AA6	A	275	290	Right-handed alpha
Helix 7	AA7	A	303	307	Right-handed 310
Helix 8	AA8	A	308	317	Right-handed alpha
Helix 9	AA9	A	354	356	Right-handed 310
Helix 10	AB1	A	367	382	Right-handed alpha
Helix 11	AB2	A	387	398	Right-handed alpha
Helix 12	AB3	A	402	407	Right-handed alpha
Helix 13	AB4	A	409	415	Right-handed alpha
Helix 14	AB5	A	426	434	Right-handed alpha
Helix 15	AB6	A	440	455	Right-handed alpha
Helix 16	AB7	B	42	58	Right-handed alpha
Helix 17	AB8	B	77	87	Right-handed alpha
Helix 18	AB9	B	99	101	Right-handed 310
Helix 19	AC1	B	107	117	Right-handed alpha
Helix 20	AC2	B	240	247	Right-handed alpha
Helix 21	AC3	B	275	289	Right-handed alpha
Helix 22	AC4	B	304	307	Right-handed 310
Helix 23	AC5	B	308	318	Right-handed alpha
Helix 24	AC6	B	370	381	Right-handed alpha
Helix 25	AC7	B	387	395	Right-handed alpha
Helix 26	AC8	B	395	401	Right-handed alpha
Helix 27	AC9	B	403	409	Right-handed alpha
Helix 28	AD1	B	410	420	Right-handed alpha
Helix 29	AD2	B	426	437	Right-handed alpha
Helix 30	AD3	B	441	452	Right-handed alpha
Helix 31	AD4	C	14	19	Right-handed 310
Helix 32	AD5	C	43	58	Right-handed alpha
Helix 33	AD6	C	75	83	Right-handed alpha
Helix 34	AD7	C	99	101	Right-handed 310
Helix 35	AD8	C	108	117	Right-handed alpha
Helix 36	AD9	C	241	248	Right-handed alpha
Helix 37	AE1	C	274	278	Right-handed alpha
Helix 38	AE2	C	279	290	Right-handed alpha
Helix 39	AE3	C	303	307	Right-handed 310
Helix 40	AE4	C	308	318	Right-handed alpha
Helix 41	AE5	C	351	356	Right-handed alpha
Helix 42	AE6	C	367	383	Right-handed alpha
Helix 43	AE7	C	387	401	Right-handed alpha
Helix 44	AE8	C	402	409	Right-handed alpha
Helix 45	AE9	C	414	420	Right-handed alpha
Helix 46	AF1	C	426	437	Right-handed alpha
Helix 47	AF2	C	439	450	Right-handed alpha
Helix 48	AF3	D	49	65	Right-handed alpha
Helix 49	AF4	D	84	93	Right-handed alpha
Helix 50	AF5	D	106	109	Right-handed 310
Helix 51	AF6	D	114	124	Right-handed alpha
Helix 52	AF7	D	244	249	Right-handed alpha
Helix 53	AF8	D	271	287	Right-handed alpha
Helix 54	AF9	D	300	304	Right-handed 310
Helix 55	AG1	D	305	316	Right-handed alpha
Helix 56	AG2	D	347	352	Right-handed alpha
Helix 57	AG3	D	363	378	Right-handed alpha
Helix 58	AG4	D	383	397	Right-handed alpha
Helix 59	AG5	D	404	409	Right-handed alpha
Helix 60	AG6	D	411	416	Right-handed alpha
Helix 61	AG7	D	422	432	Right-handed alpha
Helix 62	AG8	D	435	453	Right-handed alpha
Helix 63	AG9	E	49	66	Right-handed alpha
Helix 64	AH1	E	83	93	Right-handed alpha
Helix 65	AH2	E	106	108	Right-handed 310
Helix 66	AH3	E	119	125	Right-handed alpha
Helix 67	AH4	E	244	253	Right-handed alpha
Helix 68	AH5	E	258	264	Right-handed alpha
Helix 69	AH6	E	270	284	Right-handed alpha
Helix 70	AH7	E	301	304	Right-handed 310
Helix 71	AH8	E	305	313	Right-handed alpha
Helix 72	AH9	E	347	352	Right-handed alpha
Helix 73	AI1	E	363	378	Right-handed alpha
Helix 74	AI2	E	385	395	Right-handed alpha
Helix 75	AI3	E	398	416	Right-handed alpha
Helix 76	AI4	E	422	427	Right-handed alpha
Helix 77	AI5	E	428	432	Right-handed alpha
Helix 78	AI6	E	438	452	Right-handed alpha
Helix 79	AI7	F	20	24	Right-handed 310
Helix 80	AI8	F	49	65	Right-handed alpha
Helix 81	AI9	F	82	94	Right-handed alpha
Helix 82	AJ1	F	105	109	Right-handed 310
Helix 83	AJ2	F	119	124	Right-handed alpha
Helix 84	AJ3	F	244	250	Right-handed 310
Helix 85	AJ4	F	259	264	Right-handed alpha
Helix 86	AJ5	F	269	280	Right-handed alpha
Helix 87	AJ6	F	300	304	Right-handed 310
Helix 88	AJ7	F	305	316	Right-handed alpha
Helix 89	AJ8	F	347	352	Right-handed alpha
Helix 90	AJ9	F	365	377	Right-handed alpha
Helix 91	AK1	F	383	397	Right-handed alpha
Helix 92	AK2	F	404	416	Right-handed alpha
Helix 93	AK3	F	423	433	Right-handed alpha
Helix 94	AK4	F	440	452	Right-handed alpha

There are 22 sheets in PDB entry 6QI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	65	69	parallel
Strand 3	A	358	362	parallel
Strand 4	D	433	434	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	298	302	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	345	347	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	F	354	358	anti-parallel
Strand 3	F	72	76	parallel
Strand 4	F	323	328	parallel
Strand 5	F	295	298	parallel
Strand 6	F	100	101	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	298	302	parallel
Strand 3	B	326	331	parallel
Strand 4	B	65	69	parallel
Strand 5	B	358	362	parallel
Strand 6	E	433	434	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	358	362	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	298	302	parallel
Strand 3	C	326	329	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	295	296	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	345	347	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	46	47	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	72	76	parallel
Strand 3	D	354	358	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	297	299	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	341	343	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	295	299	parallel
Strand 3	E	323	328	parallel
Strand 4	E	72	76	parallel
Strand 5	E	354	358	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	130	first strand
Strand 2	E	290	293	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	341	343	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	46	47	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	334	first strand
Strand 2	F	341	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QI8