Analysis of interatomic Contacts of Structural Units in PDB entry:
6QI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QI9 entry

There are 6 chains in PDB entry 6QI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LYS 456
B	LYS 2	ASP 452
C	LYS 2	ASP 452
D	ALA 51	ASN 453
E	THR 8	ASN 453
F	THR 8	ASN 453

There are 99 helices in PDB entry 6QI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	19	Right-handed 310
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	75	88	Right-handed alpha
Helix 4	AA4	A	107	120	Right-handed alpha
Helix 5	AA5	A	239	247	Right-handed alpha
Helix 6	AA6	A	272	274	Right-handed 310
Helix 7	AA7	A	275	290	Right-handed alpha
Helix 8	AA8	A	303	307	Right-handed 310
Helix 9	AA9	A	308	320	Right-handed alpha
Helix 10	AB1	A	347	350	Right-handed 310
Helix 11	AB2	A	351	356	Right-handed alpha
Helix 12	AB3	A	370	382	Right-handed alpha
Helix 13	AB4	A	387	396	Right-handed alpha
Helix 14	AB5	A	397	400	Right-handed 310
Helix 15	AB6	A	402	408	Right-handed alpha
Helix 16	AB7	A	409	421	Right-handed alpha
Helix 17	AB8	A	426	434	Right-handed alpha
Helix 18	AB9	A	440	455	Right-handed alpha
Helix 19	AC1	B	45	58	Right-handed alpha
Helix 20	AC2	B	75	87	Right-handed alpha
Helix 21	AC3	B	109	117	Right-handed alpha
Helix 22	AC4	B	240	244	Right-handed alpha
Helix 23	AC5	B	275	279	Right-handed alpha
Helix 24	AC6	B	279	288	Right-handed alpha
Helix 25	AC7	B	303	307	Right-handed 310
Helix 26	AC8	B	308	319	Right-handed alpha
Helix 27	AC9	B	352	356	Right-handed 310
Helix 28	AD1	B	367	383	Right-handed alpha
Helix 29	AD2	B	387	401	Right-handed alpha
Helix 30	AD3	B	403	408	Right-handed alpha
Helix 31	AD4	B	409	420	Right-handed alpha
Helix 32	AD5	B	426	431	Right-handed alpha
Helix 33	AD6	B	432	437	Right-handed alpha
Helix 34	AD7	B	440	452	Right-handed alpha
Helix 35	AD8	C	14	19	Right-handed 310
Helix 36	AD9	C	42	58	Right-handed alpha
Helix 37	AE1	C	75	83	Right-handed alpha
Helix 38	AE2	C	84	86	Right-handed 310
Helix 39	AE3	C	108	117	Right-handed alpha
Helix 40	AE4	C	239	246	Right-handed alpha
Helix 41	AE5	C	279	290	Right-handed alpha
Helix 42	AE6	C	304	307	Right-handed 310
Helix 43	AE7	C	308	318	Right-handed alpha
Helix 44	AE8	C	346	350	Right-handed 310
Helix 45	AE9	C	351	356	Right-handed alpha
Helix 46	AF1	C	367	382	Right-handed alpha
Helix 47	AF2	C	387	401	Right-handed alpha
Helix 48	AF3	C	402	407	Right-handed alpha
Helix 49	AF4	C	410	420	Right-handed alpha
Helix 50	AF5	C	426	435	Right-handed alpha
Helix 51	AF6	C	439	450	Right-handed alpha
Helix 52	AF7	D	55	66	Right-handed alpha
Helix 53	AF8	D	82	93	Right-handed alpha
Helix 54	AF9	D	114	119	Right-handed alpha
Helix 55	AG1	D	120	126	Right-handed alpha
Helix 56	AG2	D	244	249	Right-handed alpha
Helix 57	AG3	D	272	280	Right-handed alpha
Helix 58	AG4	D	282	287	Right-handed alpha
Helix 59	AG5	D	300	304	Right-handed 310
Helix 60	AG6	D	305	316	Right-handed alpha
Helix 61	AG7	D	343	346	Right-handed 310
Helix 62	AG8	D	347	352	Right-handed alpha
Helix 63	AG9	D	363	377	Right-handed alpha
Helix 64	AH1	D	383	395	Right-handed alpha
Helix 65	AH2	D	399	417	Right-handed alpha
Helix 66	AH3	D	422	427	Right-handed alpha
Helix 67	AH4	D	435	451	Right-handed alpha
Helix 68	AH5	E	49	66	Right-handed alpha
Helix 69	AH6	E	82	93	Right-handed alpha
Helix 70	AH7	E	105	109	Right-handed 310
Helix 71	AH8	E	116	125	Right-handed alpha
Helix 72	AH9	E	244	253	Right-handed alpha
Helix 73	AI1	E	258	264	Right-handed alpha
Helix 74	AI2	E	269	284	Right-handed alpha
Helix 75	AI3	E	300	304	Right-handed 310
Helix 76	AI4	E	305	314	Right-handed alpha
Helix 77	AI5	E	345	346	Right-handed 310
Helix 78	AI6	E	347	351	Right-handed 310
Helix 79	AI7	E	364	377	Right-handed alpha
Helix 80	AI8	E	385	395	Right-handed alpha
Helix 81	AI9	E	398	414	Right-handed alpha
Helix 82	AJ1	E	422	433	Right-handed alpha
Helix 83	AJ2	E	435	452	Right-handed alpha
Helix 84	AJ3	F	49	65	Right-handed alpha
Helix 85	AJ4	F	84	95	Right-handed alpha
Helix 86	AJ5	F	104	109	Right-handed 310
Helix 87	AJ6	F	114	125	Right-handed alpha
Helix 88	AJ7	F	245	250	Right-handed 310
Helix 89	AJ8	F	258	263	Right-handed 310
Helix 90	AJ9	F	270	283	Right-handed alpha
Helix 91	AK1	F	300	304	Right-handed 310
Helix 92	AK2	F	305	316	Right-handed alpha
Helix 93	AK3	F	347	352	Right-handed alpha
Helix 94	AK4	F	363	377	Right-handed alpha
Helix 95	AK5	F	383	397	Right-handed alpha
Helix 96	AK6	F	398	405	Right-handed alpha
Helix 97	AK7	F	406	417	Right-handed alpha
Helix 98	AK8	F	423	433	Right-handed alpha
Helix 99	AK9	F	437	452	Right-handed alpha

There are 20 sheets in PDB entry 6QI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	358	359	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	298	301	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	298	302	parallel
Strand 3	B	326	331	parallel
Strand 4	B	65	69	parallel
Strand 5	B	358	362	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	358	362	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	298	302	parallel
Strand 3	C	326	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	295	296	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	355	358	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	325	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	341	342	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	103	first strand
Strand 2	E	295	298	parallel
Strand 3	E	323	328	parallel
Strand 4	E	72	76	parallel
Strand 5	E	354	357	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	129	first strand
Strand 2	E	291	293	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	341	343	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	46	47	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	295	298	parallel
Strand 3	F	323	328	parallel
Strand 4	F	72	76	parallel
Strand 5	F	354	358	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	334	first strand
Strand 2	F	341	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QI9