Analysis of interatomic Contacts of Structural Units in PDB entry:
6QIC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QIC entry

There are 3 chains in PDB entry 6QIC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 546	PRO 1177
E	U 1	U 11
B	ASN 547	VAL 1166

There are120 helices in PDB entry 6QIC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	549	557	Right-handed alpha
Helix 2	AA2	A	558	561	Right-handed 310
Helix 3	AA3	A	562	573	Right-handed alpha
Helix 4	AA4	A	585	597	Right-handed alpha
Helix 5	AA5	A	611	627	Right-handed alpha
Helix 6	AA6	A	655	665	Right-handed alpha
Helix 7	AA7	A	678	682	Right-handed 310
Helix 8	AA8	A	683	700	Right-handed alpha
Helix 9	AA9	A	713	721	Right-handed alpha
Helix 10	AB1	A	747	763	Right-handed alpha
Helix 11	AB2	A	774	792	Right-handed alpha
Helix 12	AB3	A	809	815	Right-handed alpha
Helix 13	AB4	A	816	818	Right-handed 310
Helix 14	AB5	A	832	837	Right-handed alpha
Helix 15	AB6	A	872	881	Right-handed alpha
Helix 16	AB7	A	882	884	Right-handed 310
Helix 17	AB8	A	896	903	Right-handed alpha
Helix 18	AB9	A	910	914	Right-handed 310
Helix 19	AC1	A	917	927	Right-handed alpha
Helix 20	AC2	A	931	935	Right-handed 310
Helix 21	AC3	A	942	956	Right-handed alpha
Helix 22	AC4	A	966	974	Right-handed alpha
Helix 23	AC5	A	978	991	Right-handed alpha
Helix 24	AC6	A	993	1005	Right-handed alpha
Helix 25	AC7	A	1013	1015	Right-handed 310
Helix 26	AC8	A	1016	1026	Right-handed alpha
Helix 27	AC9	A	1032	1047	Right-handed alpha
Helix 28	AD1	A	1050	1057	Right-handed alpha
Helix 29	AD2	A	1060	1081	Right-handed alpha
Helix 30	AD3	A	1092	1104	Right-handed alpha
Helix 31	AD4	A	1161	1169	Right-handed alpha
Helix 32	AD5	B	549	557	Right-handed alpha
Helix 33	AD6	B	558	561	Right-handed 310
Helix 34	AD7	B	562	573	Right-handed alpha
Helix 35	AD8	B	585	597	Right-handed alpha
Helix 36	AD9	B	611	627	Right-handed alpha
Helix 37	AE1	B	655	665	Right-handed alpha
Helix 38	AE2	B	678	682	Right-handed 310
Helix 39	AE3	B	683	700	Right-handed alpha
Helix 40	AE4	B	713	721	Right-handed alpha
Helix 41	AE5	B	747	763	Right-handed alpha
Helix 42	AE6	B	774	793	Right-handed alpha
Helix 43	AE7	B	809	814	Right-handed alpha
Helix 44	AE8	B	815	817	Right-handed 310
Helix 45	AE9	B	872	881	Right-handed alpha
Helix 46	AF1	B	882	884	Right-handed 310
Helix 47	AF2	B	896	903	Right-handed alpha
Helix 48	AF3	B	910	914	Right-handed 310
Helix 49	AF4	B	917	927	Right-handed alpha
Helix 50	AF5	B	931	935	Right-handed 310
Helix 51	AF6	B	942	956	Right-handed alpha
Helix 52	AF7	B	966	974	Right-handed alpha
Helix 53	AF8	B	978	991	Right-handed alpha
Helix 54	AF9	B	993	1006	Right-handed alpha
Helix 55	AG1	B	1016	1026	Right-handed alpha
Helix 56	AG2	B	1032	1047	Right-handed alpha
Helix 57	AG3	B	1050	1057	Right-handed alpha
Helix 58	AG4	B	1060	1081	Right-handed alpha
Helix 59	AG5	B	1092	1104	Right-handed alpha
Helix 60	AG6	B	1161	1169	Right-handed alpha
Helix 61	AG7	C	550	557	Right-handed alpha
Helix 62	AG8	C	558	561	Right-handed 310
Helix 63	AG9	C	562	573	Right-handed alpha
Helix 64	AH1	C	585	597	Right-handed alpha
Helix 65	AH2	C	611	627	Right-handed alpha
Helix 66	AH3	C	655	665	Right-handed alpha
Helix 67	AH4	C	678	682	Right-handed 310
Helix 68	AH5	C	683	700	Right-handed alpha
Helix 69	AH6	C	710	712	Right-handed 310
Helix 70	AH7	C	713	721	Right-handed alpha
Helix 71	AH8	C	747	763	Right-handed alpha
Helix 72	AH9	C	774	793	Right-handed alpha
Helix 73	AI1	C	809	814	Right-handed alpha
Helix 74	AI2	C	815	817	Right-handed 310
Helix 75	AI3	C	832	837	Right-handed alpha
Helix 76	AI4	C	872	881	Right-handed alpha
Helix 77	AI5	C	882	884	Right-handed 310
Helix 78	AI6	C	896	903	Right-handed alpha
Helix 79	AI7	C	910	914	Right-handed 310
Helix 80	AI8	C	917	927	Right-handed alpha
Helix 81	AI9	C	942	956	Right-handed alpha
Helix 82	AJ1	C	966	973	Right-handed alpha
Helix 83	AJ2	C	978	991	Right-handed alpha
Helix 84	AJ3	C	993	1003	Right-handed alpha
Helix 85	AJ4	C	1013	1015	Right-handed 310
Helix 86	AJ5	C	1016	1026	Right-handed alpha
Helix 87	AJ6	C	1032	1047	Right-handed alpha
Helix 88	AJ7	C	1050	1057	Right-handed alpha
Helix 89	AJ8	C	1060	1081	Right-handed alpha
Helix 90	AJ9	C	1092	1104	Right-handed alpha
Helix 91	AK1	C	1161	1169	Right-handed alpha
Helix 92	AK2	D	549	557	Right-handed alpha
Helix 93	AK3	D	558	561	Right-handed 310
Helix 94	AK4	D	562	573	Right-handed alpha
Helix 95	AK5	D	585	597	Right-handed alpha
Helix 96	AK6	D	611	627	Right-handed alpha
Helix 97	AK7	D	655	665	Right-handed alpha
Helix 98	AK8	D	678	682	Right-handed 310
Helix 99	AK9	D	683	700	Right-handed alpha
Helix 100	AL1	D	713	721	Right-handed alpha
Helix 101	AL2	D	747	763	Right-handed alpha
Helix 102	AL3	D	774	792	Right-handed alpha
Helix 103	AL4	D	809	815	Right-handed alpha
Helix 104	AL5	D	832	837	Right-handed alpha
Helix 105	AL6	D	872	881	Right-handed alpha
Helix 106	AL7	D	882	884	Right-handed 310
Helix 107	AL8	D	896	903	Right-handed alpha
Helix 108	AL9	D	910	914	Right-handed 310
Helix 109	AM1	D	917	927	Right-handed alpha
Helix 110	AM2	D	931	935	Right-handed 310
Helix 111	AM3	D	942	956	Right-handed alpha
Helix 112	AM4	D	966	974	Right-handed alpha
Helix 113	AM5	D	978	991	Right-handed alpha
Helix 114	AM6	D	993	1006	Right-handed alpha
Helix 115	AM7	D	1016	1026	Right-handed alpha
Helix 116	AM8	D	1032	1047	Right-handed alpha
Helix 117	AM9	D	1050	1057	Right-handed alpha
Helix 118	AN1	D	1060	1081	Right-handed alpha
Helix 119	AN2	D	1092	1104	Right-handed alpha
Helix 120	AN3	D	1161	1169	Right-handed alpha

There are 15 sheets in PDB entry 6QIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	643	first strand
Strand 2	A	634	638	anti-parallel
Strand 3	A	650	654	parallel
Strand 4	A	604	609	parallel
Strand 5	A	671	676	parallel
Strand 6	A	704	708	parallel
Strand 7	A	575	580	parallel
Strand 8	A	726	729	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	740	first strand
Strand 2	A	889	893	parallel
Strand 3	A	843	848	parallel
Strand 4	A	767	771	parallel
Strand 5	A	825	830	parallel
Strand 6	A	799	804	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	851	858	first strand
Strand 2	A	863	870	anti-parallel
Strand 3	A	1145	1148	parallel
Strand 4	A	1152	1155	anti-parallel
Strand 5	A	1126	1127	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1118	first strand
Strand 2	A	1107	1109	anti-parallel
Strand 3	A	1140	1142	anti-parallel
Strand 4	A	1158	1159	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1174	1176	first strand
Strand 2	B	1174	1176	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	643	first strand
Strand 2	B	634	638	anti-parallel
Strand 3	B	650	654	parallel
Strand 4	B	604	609	parallel
Strand 5	B	671	676	parallel
Strand 6	B	704	708	parallel
Strand 7	B	575	580	parallel
Strand 8	B	726	729	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	740	first strand
Strand 2	B	889	893	parallel
Strand 3	B	845	848	parallel
Strand 4	B	768	771	parallel
Strand 5	B	825	830	parallel
Strand 6	B	799	804	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	851	858	first strand
Strand 2	B	863	870	anti-parallel
Strand 3	B	1145	1148	parallel
Strand 4	B	1152	1155	anti-parallel
Strand 5	B	1124	1127	parallel
Strand 6	B	1116	1118	anti-parallel
Strand 7	B	1107	1110	anti-parallel
Strand 8	B	1140	1142	anti-parallel
Strand 9	B	1158	1160	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	643	first strand
Strand 2	C	634	638	anti-parallel
Strand 3	C	650	654	parallel
Strand 4	C	604	609	parallel
Strand 5	C	671	676	parallel
Strand 6	C	704	708	parallel
Strand 7	C	575	580	parallel
Strand 8	C	726	729	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	736	740	first strand
Strand 2	C	889	893	parallel
Strand 3	C	843	848	parallel
Strand 4	C	767	771	parallel
Strand 5	C	825	830	parallel
Strand 6	C	799	804	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	851	858	first strand
Strand 2	C	863	870	anti-parallel
Strand 3	C	1145	1148	parallel
Strand 4	C	1152	1155	anti-parallel
Strand 5	C	1124	1127	parallel
Strand 6	C	1116	1118	anti-parallel
Strand 7	C	1107	1110	anti-parallel
Strand 8	C	1140	1142	anti-parallel
Strand 9	C	1158	1160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1173	1176	first strand
Strand 2	D	1174	1177	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	641	643	first strand
Strand 2	D	634	638	anti-parallel
Strand 3	D	650	654	parallel
Strand 4	D	604	609	parallel
Strand 5	D	671	676	parallel
Strand 6	D	704	708	parallel
Strand 7	D	575	580	parallel
Strand 8	D	726	729	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	736	740	first strand
Strand 2	D	889	893	parallel
Strand 3	D	843	848	parallel
Strand 4	D	767	771	parallel
Strand 5	D	824	830	parallel
Strand 6	D	798	804	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	851	858	first strand
Strand 2	D	863	870	anti-parallel
Strand 3	D	1145	1148	parallel
Strand 4	D	1152	1155	anti-parallel
Strand 5	D	1124	1127	parallel
Strand 6	D	1116	1118	anti-parallel
Strand 7	D	1107	1110	anti-parallel
Strand 8	D	1140	1142	anti-parallel
Strand 9	D	1158	1160	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QIC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QIC