Analysis of interatomic Contacts of Structural Units in PDB entry:
6QIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QIP entry

There are 3 chains in PDB entry 6QIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LEU 585
B
 SER 3SER 269
C
 ILE 1HIS 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6QIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
35 56Right-handed alpha
Helix 4
AA4
A
65 78Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
86 93Right-handed 310
Helix 7
AA7
A
96 105Right-handed alpha
Helix 8
AA8
A
119 130Right-handed alpha
Helix 9
AA9
A
130 146Right-handed alpha
Helix 10
AB1
A
150 169Right-handed alpha
Helix 11
AB2
A
173 206Right-handed alpha
Helix 12
AB3
A
207 223Right-handed alpha
Helix 13
AB4
A
227 247Right-handed alpha
Helix 14
AB5
A
249 266Right-handed alpha
Helix 15
AB6
A
267 271Right-handed 310
Helix 16
AB7
A
277 281Right-handed 310
Helix 17
AB8
A
282 292Right-handed alpha
Helix 18
AB9
A
305 310Right-handed alpha
Helix 19
AC1
A
314 322Right-handed alpha
Helix 20
AC2
A
322 338Right-handed alpha
Helix 21
AC3
A
342 361Right-handed alpha
Helix 22
AC4
A
365 370Right-handed alpha
Helix 23
AC5
A
372 375Right-handed 310
Helix 24
AC6
A
376 415Right-handed alpha
Helix 25
AC7
A
419 438Right-handed alpha
Helix 26
AC8
A
441 467Right-handed alpha
Helix 27
AC9
A
470 480Right-handed alpha
Helix 28
AD1
A
483 491Right-handed alpha
Helix 29
AD2
A
510 516Right-handed 310
Helix 30
AD3
A
517 536Right-handed alpha
Helix 31
AD4
A
540 561Right-handed alpha
Helix 32
AD5
A
563 583Right-handed alpha
Helix 33
AD6
B
49 54Right-handed 310
Helix 34
AD7
B
59 81Right-handed alpha
Helix 35
AD8
B
131 143Right-handed alpha
Helix 36
AD9
B
146 157Right-handed alpha
Helix 37
AE1
B
157 170Right-handed alpha
Helix 38
AE2
B
170 175Right-handed alpha
Helix 39
AE3
B
246 248Right-handed 310
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There are 6 sheets in PDB entry 6QIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
24 30anti-parallel
Strand 4
B
6 14anti-parallel
Strand 5
B
89 99anti-parallel
Strand 6
B
103 112anti-parallel
Strand 7
B
115 121anti-parallel
Strand 8
B
126 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 188first strand
Strand 2
B
193 203anti-parallel
Strand 3
B
234 243anti-parallel
Strand 4
B
223 228anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
209 214anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
263 265anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
21 30anti-parallel
Strand 3
C
62 70anti-parallel
Strand 4
C
50 51anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
21 30anti-parallel
Strand 3
C
62 70anti-parallel
Strand 4
C
55 56anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
36 41anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
91 94anti-parallel
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