Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QJ1 entry

There is 1 chain in PDB entry 6QJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 1177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6QJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 50Right-handed alpha
Helix 2
AA2
A
61 66Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
123 133Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
157 170Right-handed alpha
Helix 7
AA7
A
171 202Right-handed alpha
Helix 8
AA8
A
202 218Right-handed alpha
Helix 9
AA9
A
988 1051Right-handed alpha
Helix 10
AB1
A
1065 1069Right-handed 310
Helix 11
AB2
A
1083 1087Right-handed 310
Helix 12
AB3
A
1088 1103Right-handed alpha
Helix 13
AB4
A
1104 1107Right-handed 310
Helix 14
AB5
A
1122 1135Right-handed alpha
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There are 3 sheets in PDB entry 6QJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
100 107anti-parallel
Strand 5
A
113 117anti-parallel
Strand 6
A
120 122anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
1111 1115parallel
Strand 3
A
1141 1145parallel
Strand 4
A
27 31parallel
Strand 5
A
1157 1164parallel
Strand 6
A
1167 1173anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1059first strand
Strand 2
A
1071 1076anti-parallel
Strand 3
A
1079 1081anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il