Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QJ2 entry

There are 2 chains in PDB entry 6QJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 270ILE 1539
B
 TYR 771ALA 893
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6QJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 322Right-handed alpha
Helix 2
AA2
A
333 338Right-handed 310
Helix 3
AA3
A
397 408Right-handed alpha
Helix 4
AA4
A
420 430Right-handed alpha
Helix 5
AA5
A
441 451Right-handed alpha
Helix 6
AA6
A
455 462Right-handed alpha
Helix 7
AA7
A
1379 1410Right-handed alpha
Helix 8
AA8
A
1423 1428Right-handed alpha
Helix 9
AA9
A
1447 1466Right-handed alpha
Helix 10
AB1
A
1481 1495Right-handed alpha
Helix 11
AB2
A
1507 1513Right-handed alpha
Helix 12
AB3
B
779 790Right-handed alpha
Helix 13
AB4
B
837 846Right-handed alpha
Helix 14
AB5
B
849 856Right-handed alpha
Helix 15
AB6
B
857 872Right-handed alpha
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There are 5 sheets in PDB entry 6QJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 293first strand
Strand 2
A
273 284anti-parallel
Strand 3
A
349 361anti-parallel
Strand 4
A
367 369anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 293first strand
Strand 2
A
273 284anti-parallel
Strand 3
A
349 361anti-parallel
Strand 4
A
375 382anti-parallel
Strand 5
A
387 391anti-parallel
Strand 6
A
394 396anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
1470 1474parallel
Strand 3
A
1500 1504parallel
Strand 4
A
300 304parallel
Strand 5
A
1516 1523parallel
Strand 6
A
1526 1533anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1413 1418first strand
Strand 2
A
1429 1434anti-parallel
Strand 3
A
1441 1442anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
835 836first strand
Strand 2
B
885 888anti-parallel
Strand 3
B
875 878anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il