Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QJ4 entry

There are 5 chains in PDB entry 6QJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3UNK 1203
B
 SER 241ASP 298
C
 LYS 271VAL 1538
D
 UNK 1UNK 24
E
 LYS 776LYS 889
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 6QJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
44 58Right-handed alpha
Helix 4
AA4
A
63 66Right-handed 310
Helix 5
AA5
A
67 80Right-handed alpha
Helix 6
AA6
A
85 105Right-handed alpha
Helix 7
AA7
A
107 113Right-handed alpha
Helix 8
AA8
A
121 140Right-handed alpha
Helix 9
AA9
A
141 146Right-handed alpha
Helix 10
AB1
A
174 191Right-handed alpha
Helix 11
AB2
A
199 219Right-handed alpha
Helix 12
AB3
A
226 239Right-handed alpha
Helix 13
AB4
A
247 261Right-handed alpha
Helix 14
AB5
A
264 279Right-handed alpha
Helix 15
AB6
A
282 295Right-handed alpha
Helix 16
AB7
A
305 319Right-handed alpha
Helix 17
AB8
A
322 325Right-handed 310
Helix 18
AB9
A
326 333Right-handed alpha
Helix 19
AC1
A
334 336Right-handed 310
Helix 20
AC2
A
338 360Right-handed alpha
Helix 21
AC3
A
367 381Right-handed alpha
Helix 22
AC4
A
385 399Right-handed alpha
Helix 23
AC5
A
400 402Right-handed 310
Helix 24
AC6
A
406 420Right-handed alpha
Helix 25
AC7
A
421 423Right-handed 310
Helix 26
AC8
A
425 442Right-handed alpha
Helix 27
AC9
A
454 473Right-handed alpha
Helix 28
AD1
A
515 563Right-handed alpha
Helix 29
AD2
A
564 566Right-handed 310
Helix 30
AD3
A
570 586Right-handed alpha
Helix 31
AD4
A
590 597Right-handed alpha
Helix 32
AD5
A
598 600Right-handed 310
Helix 33
AD6
A
612 626Right-handed alpha
Helix 34
AD7
A
643 648Right-handed alpha
Helix 35
AD8
A
649 651Right-handed 310
Helix 36
AD9
A
655 670Right-handed alpha
Helix 37
AE1
A
674 685Right-handed alpha
Helix 38
AE2
A
699 708Right-handed alpha
Helix 39
AE3
A
709 710Right-handed 310
Helix 40
AE4
A
711 715Right-handed 310
Helix 41
AE5
A
718 725Right-handed alpha
Helix 42
AE6
A
728 733Right-handed 310
Helix 43
AE7
A
734 747Right-handed alpha
Helix 44
AE8
A
770 780Right-handed alpha
Helix 45
AE9
A
788 803Right-handed alpha
Helix 46
AF1
A
806 819Right-handed alpha
Helix 47
AF2
A
877 904Right-handed alpha
Helix 48
AF3
A
948 954Right-handed alpha
Helix 49
AF4
A
960 970Right-handed alpha
Helix 50
AF5
A
1004 1013Right-handed alpha
Helix 51
AF6
A
1018 1033Right-handed alpha
Helix 52
AF7
A
1037 1051Right-handed alpha
Helix 53
AF8
A
1075 1088Right-handed alpha
Helix 54
AF9
A
1100 1105Right-handed 310
Helix 55
AG1
A
1110 1115Right-handed alpha
Helix 56
AG2
A
1115 1126Right-handed alpha
Helix 57
AG3
A
1132 1144Right-handed alpha
Helix 58
AG4
A
1145 1147Right-handed 310
Helix 59
AG5
A
1153 1163Right-handed alpha
Helix 60
AG6
A
1170 1177Right-handed alpha
Helix 61
AG7
A
1178 1180Right-handed 310
Helix 62
AG8
A
1190 1199Right-handed alpha
Helix 63
AG9
B
249 253Right-handed 310
Helix 64
AH1
B
264 270Right-handed alpha
Helix 65
AH2
B
271 273Right-handed 310
Helix 66
AH3
C
310 323Right-handed alpha
Helix 67
AH4
C
397 408Right-handed alpha
Helix 68
AH5
C
420 426Right-handed alpha
Helix 69
AH6
C
442 445Right-handed 310
Helix 70
AH7
C
446 451Right-handed alpha
Helix 71
AH8
C
452 461Right-handed 310
Helix 72
AH9
C
1378 1382Right-handed 310
Helix 73
AI1
C
1383 1410Right-handed alpha
Helix 74
AI2
C
1449 1466Right-handed alpha
Helix 75
AI3
C
1481 1495Right-handed alpha
Helix 76
AI4
C
1507 1512Right-handed alpha
Helix 77
AI5
E
777 782Right-handed alpha
Helix 78
AI6
E
783 788Right-handed 310
Helix 79
AI7
E
836 848Right-handed alpha
Helix 80
AI8
E
857 873Right-handed alpha
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There are 5 sheets in PDB entry 6QJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
272 282anti-parallel
Strand 3
C
351 360anti-parallel
Strand 4
C
368 369anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
272 282anti-parallel
Strand 3
C
351 360anti-parallel
Strand 4
C
375 379anti-parallel
Strand 5
C
389 391anti-parallel
Strand 6
C
394 396anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
418 419first strand
Strand 2
C
1470 1474parallel
Strand 3
C
1500 1504parallel
Strand 4
C
300 304parallel
Strand 5
C
1516 1523parallel
Strand 6
C
1526 1533anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1413 1415first strand
Strand 2
C
1432 1434anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
875 876first strand
Strand 2
E
887 888anti-parallel
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