Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QJD entry

There are 4 chains in PDB entry 6QJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 308LYS 393
B
 PRO 308LYS 393
C
 ILE 307LYS 393
D
 PRO 308LYS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6QJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
371 381Right-handed alpha
Helix 2
AA2
B
345 350Right-handed alpha
Helix 3
AA3
B
371 381Right-handed alpha
Helix 4
AA4
C
371 381Right-handed alpha
Helix 5
AA5
D
345 350Right-handed alpha
Helix 6
AA6
D
371 381Right-handed alpha
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There are 8 sheets in PDB entry 6QJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 317first strand
Strand 2
A
385 391anti-parallel
Strand 3
A
358 362anti-parallel
Strand 4
A
365 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
337 341anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 317first strand
Strand 2
B
385 391anti-parallel
Strand 3
B
358 362anti-parallel
Strand 4
B
365 366anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
337 341anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 317first strand
Strand 2
C
385 391anti-parallel
Strand 3
C
358 362anti-parallel
Strand 4
C
336 341anti-parallel
Strand 5
C
325 329anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
312 317first strand
Strand 2
C
385 391anti-parallel
Strand 3
C
358 362anti-parallel
Strand 4
C
365 366anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
312 317first strand
Strand 2
D
385 391anti-parallel
Strand 3
D
358 362anti-parallel
Strand 4
D
365 366anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 328first strand
Strand 2
D
337 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il